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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Ge, Z."

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Search Summary

This query matches 135 Structures.

Refinements

Structure Determination Methodology

experimental (135)

Scientific Name of Source Organism

	Homo sapiens (42)
	Human immunodeficiency virus 1 (11)
	Severe acute respiratory syndrome coronavirus 2 (11)
	Klebsiella pneumoniae (6)
	African swine fever virus (5)
	Pseudomonas sp. WBC-3 (5)
	Sus scrofa (5)
	Candidatus Cloacimonas acidaminovorans str. Evry (4)
	Human alphaherpesvirus 2 (4)
	Pisum sativum (4)

More...

Taxonomy

	Eukaryota (74)
	Bacteria (54)
	Riboviria (26)
	Varidnaviria (7)
	Duplodnaviria (4)
	Archaea (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (101)
	ELECTRON MICROSCOPY (30)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (135)
	RNA (3)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (28)
	2.0 - 2.5 (39)
	2.5 - 3.0 (25)
	3.0 - 3.5 (13)
	3.5 - 4.0 (16)
	4.0 - 4.5 (2)
	> 4.5 (2)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (7)
	2010 - 2014 (44)
	2015 - 2019 (38)
	2020 - 2024 (40)
	2025 - 2029 (2)

Enzyme Classification Name

	Oxidoreductases (24)
	Hydrolases (19)
	Transferases (15)
	Lyases (1)

Membrane Protein Annotation

	PDBTM (8)
	mpstruc (8)
	MemProtMD (5)
	OPM (3)

Symmetry Type

	Asymmetric (69)
	Cyclic (55)
	Dihedral (11)
	Icosahedral (5)
	Octahedral (1)

SCOP Classification

	Membrane and cell surface proteins and peptides (4)
	Alpha and beta proteins (a+b) (22)
	All beta proteins (8)
	Alpha and beta proteins (a/b) (11)
	Artifacts (9)
	All alpha proteins (9)

AllSelected

1 to 25 of 135 Structures

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1F03 \| pdb_00001f03	Download File View File

SOLUTION STRUCTURE OF OXIDIZED BOVINE MICROSOMAL CYTOCHROME B5 MUTANT (E44A, E48A, E56A, D60A) AND ITS INTERACTION WITH CYTOCHROME C

Wu, Y.B., Lu, J., Qian, C.M., Tang, W.X., Li, E.C., Wang, J.F., Wang, Y.H., Wang, W.H., Lu, J.X., Xie, Y., Huang, Z.X.

(2001) Eur J Biochem 268: 1620-1630

Released	2000-06-21
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	CYTOCHROME B5 (protein)
Unique Ligands	HEM

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1F04 \| pdb_00001f04	Download File View File

SOLUTION STRUCTURE OF OXIDIZED BOVINE MICROSOMAL CYTOCHROME B5 MUTANT (E44A, E48A, E56A, D60A) AND ITS INTERACTION WITH CYTOCHROME C

Wu, Y.B., Lu, J., Qian, C.M., Tang, W.X., Li, E.C., Wang, J.F., Wang, Y.H., Wang, W.H., Lu, J.X., Xie, Y., Huang, Z.X.

(2001) Eur J Biochem 268: 1620-1630

Released	2000-06-21
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	CYTOCHROME B5 (protein)
Unique Ligands	HEM

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1FI7 \| pdb_00001fi7	Download File View File

Solution structure of the imidazole complex of cytochrome C

Banci, L., Bertini, I., Liu, G., Lu, J., Reddig, T., Tang, W., Wu, Y., Zhu, D.

(2001) J Biol Inorg Chem 6: 628-637

Released	2000-08-23
Method	SOLUTION NMR
Organisms	Equus caballus
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, IMD

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1FI9 \| pdb_00001fi9	Download File View File

SOLUTION STRUCTURE OF THE IMIDAZOLE COMPLEX OF CYTOCHROME C

Banci, L., Bertini, I., Liu, G., Lu, J., Reddig, T., Tang, W., Wu, Y., Zhu, D.

(2001) J Biol Inorg Chem 6: 628-637

Released	2000-08-23
Method	SOLUTION NMR
Organisms	Equus caballus
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, IMD

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1Z5M \| pdb_00001z5m	Download File View File

Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-dimethylpropanediamide Complexed with Human PDK1

Whitlow, M., Adler, M.

(2005) J Biological Chem 280: 19867-19874

Released	2005-04-19
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Homo sapiens
Macromolecule	3-phosphoinositide dependent protein kinase-1 (protein)
Unique Ligands	CL, GOL, LI8, SO4

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2PE0 \| pdb_00002pe0	Download File View File

CRYSTAL STRUCTURE OF HUMAN PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 (PDK1) 5-Hydroxy-3-[1-(1H-pyrrol-2-yl)-eth-(Z)-ylidene]-1,3-dihydro-indol-2-one COMPLEX

Whitlow, M., Adler, M.

(2007) Bioorg Med Chem Lett 17: 3814-3818

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	3-phosphoinositide-dependent protein kinase 1 (protein)
Unique Ligands	39Z, GOL, SO4

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2PE1 \| pdb_00002pe1	Download File View File

CRYSTAL STRUCTURE OF HUMAN PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 (PDK1) {2-Oxo-3-[1-(1H-pyrrol-2-yl)-eth-(Z)-ylidene]-2,3-dihydro-1H-indol-5-yl}-urea {BX-517} COMPLEX

Whitlow, M., Adler, M.

(2007) Bioorg Med Chem Lett 17: 3814-3818

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Homo sapiens
Macromolecule	3-phosphoinositide-dependent protein kinase 1 (protein)
Unique Ligands	517, GOL, SO4

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2PE2 \| pdb_00002pe2	Download File View File

CRYSTAL STRUCTURE OF HUMAN PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 (PDK1) 3-{5-[2-Oxo-5-ureido-1,2-dihydro-indol-(3Z)-ylidenemethyl]-1H-pyrrol-3-yl}-N-(2-piperidin-1-yl-ethyl)-benzamide COMPLEX

Whitlow, M., Adler, M.

(2007) Bioorg Med Chem Lett 17: 3819-3825

Released	2007-06-19
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Homo sapiens
Macromolecule	3-phosphoinositide-dependent protein kinase 1 (protein)
Unique Ligands	464, GOL, SO4

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3A0C \| pdb_00003a0c	Download File View File

Crystal Structure of an anti-HIV mannose-binding lectin from Polygonatum cyrtonema Hua

Ding, J., Wang, D.C.

(2010) J Struct Biol 171: 309-317

Released	2010-03-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Polygonatum cyrtonema
Macromolecule	Mannose/sialic acid-binding lectin (protein)

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3A0D \| pdb_00003a0d	Download File View File

Crystal Structure of Polygonatum cyrtonema lectin (PCL) complexed with monomannoside

Ding, J., Wang, D.C.

(2010) J Struct Biol 171: 309-317

Released	2010-03-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Polygonatum cyrtonema
Macromolecule	Mannose/sialic acid-binding lectin (protein)
Unique Ligands	MMA, SO4

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3A0E \| pdb_00003a0e	Download File View File

Crystal Structure of Polygonatum cyrtonema lectin (PCL) complexed with dimannoside

Ding, J., Wang, D.C.

(2010) J Struct Biol 171: 309-317

Released	2010-03-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Polygonatum cyrtonema
Macromolecule	Mannose/sialic acid-binding lectin (protein)
Unique Ligands	SO4
Unique branched monosaccharides	MAN

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3HHU \| pdb_00003hhu	Download File View File

Human heat-shock protein 90 (HSP90) in complex with {4-[3-(2,4-dihydroxy-5-isopropyl-phenyl)-5-thioxo- 1,5-dihydro-[1,2,4]triazol-4-yl]-benzyl}-carbamic acid ethyl ester {ZK 2819}

Adler, M., Whitlow, M.

(2009) Chem Biol Drug Des 74: 43-50

Released	2009-07-14
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	819

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3K49 \| pdb_00003k49	Download File View File

Puf3 RNA binding domain bound to Cox17 RNA 3' UTR recognition sequence site B

Zhu, D., Stumpf, C.R., Krahn, J.M., Wickens, M., Hall, T.M.T.

(2009) Proc Natl Acad Sci U S A 106: 20192-20197

Released	2009-10-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	mRNA-binding protein PUF3 (protein) RNA (5'-R(CPCPUPGPUPAPAPAPUPA)-3') (nucleic acid)
Unique Ligands	CIT

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3K4E \| pdb_00003k4e	Download File View File

Puf3 RNA binding domain bound to Cox17 RNA 3' UTR recognition sequence site A

Zhu, D., Stumpf, C.R., Krahn, J.M., Wickens, M., Hall, T.M.T.

(2009) Proc Natl Acad Sci U S A 106: 20192-20197

Released	2009-10-27
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	mRNA-binding protein PUF3 (protein) RNA (5'-R(PCPUPUPGPUPAPUPAPUPA)-3') (nucleic acid)

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3O72 \| pdb_00003o72	Download File View File

Crystal structure of EfeB in complex with heme

Liu, X., Du, Q., Wang, Z., Zhu, D., Huang, Y., Li, N., Xu, S., Gu, L.

(2011) J Biological Chem 286: 14922-14931

Released	2011-03-16
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli O157:H7 str. TW14359
Macromolecule	Redox component of a tripartite ferrous iron transporter (protein)
Unique Ligands	HEM, OXY

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3Q7J \| pdb_00003q7j	Download File View File

Engineered Thermoplasma Acidophilum F3 factor mimics human aminopeptidase N (APN) as a target for anticancer drug development

Su, J., Wang, Q., Feng, J., Zhang, C., Zhu, D., We, T., Xu, W., Gu, L.

(2011) Bioorg Med Chem 19: 2991-2996

Released	2011-07-27
Method	X-RAY DIFFRACTION 2.91 Å
Organisms	Thermoplasma acidophilum DSM 1728
Macromolecule	Tricorn protease-interacting factor F3 (protein)
Unique Ligands	FBO, ZN

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3SFV \| pdb_00003sfv	Download File View File

Crystal structure of the GDP-bound Rab1a S25N mutant in complex with the coiled-coil domain of LidA from Legionella pneumophila

Yin, K., Lu, D., Zhu, D., Zhang, H., Li, B., Xu, S., Gu, L.

(2012) PLoS Pathog 8: e1002528-e1002528

Released	2012-04-18
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Homo sapiens Legionella pneumophila str. Corby
Macromolecule	LidA protein, substrate of the Dot/Icm system (protein) Ras-related protein Rab-1A (protein)
Unique Ligands	GDP

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3SP4 \| pdb_00003sp4	Download File View File

Crystal structure of aprataxin ortholog Hnt3 from Schizosaccharomyces pombe

Gong, Y., Zhu, D., Ding, J., Dou, C., Ren, X., Jiang, T., Wang, D.

(2011) Nat Struct Mol Biol 18: 1297-1299

Released	2011-10-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Aprataxin-like protein (protein)
Unique Ligands	SO4, ZN

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3SPD \| pdb_00003spd	Download File View File

Crystal structure of aprataxin ortholog Hnt3 in complex with DNA

Gong, Y., Zhu, D., Ding, J., Dou, C., Ren, X., Jiang, T., Wang, D.

(2011) Nat Struct Mol Biol 18: 1297-1299

Released	2011-10-12
Method	X-RAY DIFFRACTION 1.912 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Aprataxin-like protein (protein) DNA (5'-D(GPTPCPAPCPTPAPTPCPGPGPAPAPTPGPAPG)-3') (nucleic acid) DNA (5'-D(TPAPTPTPCPCPGPAPTPAPGPTPGPAPC)-3') (nucleic acid)
Unique Ligands	SO4, ZN

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3SPL \| pdb_00003spl	Download File View File

Crystal structure of aprataxin ortholog Hnt3 in complex with DNA and AMP

Gong, Y., Zhu, D., Ding, J., Dou, C., Ren, X., Jiang, T., Wang, D.

(2011) Nat Struct Mol Biol 18: 1297-1299

Released	2011-10-12
Method	X-RAY DIFFRACTION 2.101 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Aprataxin-like protein (protein) DNA (5'-D(GPTPCPAPCPTPAPTPCPGPGPAPAPTPGPAPG)-3') (nucleic acid) DNA (5'-D(TPAPTPTPCPCPGPAPTPAPGPTPGPAPC)-3') (nucleic acid)
Unique Ligands	AMP, SO4, ZN

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3TB4 \| pdb_00003tb4	Download File View File

Crystal structure of the ISC domain of VibB

Liu, S., Zhang, C., Niu, B., Li, N., Liu, M., Wei, T., Zhu, D., Xu, S., Gu, L.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1329-1338

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Vibrio cholerae
Macromolecule	Vibriobactin-specific isochorismatase (protein)
Unique Ligands	BOG, CA, EDO, PEG, PGE

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3TEF \| pdb_00003tef	Download File View File

Crystal Structure of the Periplasmic Catecholate-Siderophore Binding Protein VctP from Vibrio Cholerae

Liu, X., Wang, Z., Liu, S., Li, N., Chen, Y., Zhu, C., Zhu, D., Wei, T., Huang, Y., Xu, S., Gu, L.

(2012) FEBS Lett 586: 1240-1244

Released	2012-08-15
Method	X-RAY DIFFRACTION 1.698 Å
Organisms	Vibrio cholerae
Macromolecule	Iron(III) ABC transporter, periplasmic iron-compound-binding protein (protein)

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3TG2 \| pdb_00003tg2	Download File View File

Crystal structure of the ISC domain of VibB in complex with isochorismate

Liu, S., Zhang, C., Niu, B., Li, N., Liu, X., Liu, M., Wei, T., Zhu, D., Huang, Y., Xu, S., Gu, L.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1329-1338

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.101 Å
Organisms	Vibrio cholerae
Macromolecule	Vibriobactin-specific isochorismatase (protein)
Unique Ligands	ISC, PGE

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3TGV \| pdb_00003tgv	Download File View File

Crystal structure of HutZ,the heme storsge protein from Vibrio cholerae

Liu, X., Gong, J., Wang, Z., Du, Q., Wei, T., Zhu, D., Huang, Y., Xu, S., Gu, L.

To be published

Released	2012-08-22
Method	X-RAY DIFFRACTION 1.999 Å
Organisms	Vibrio cholerae O395
Macromolecule	Heme-binding protein HutZ (protein)
Unique Ligands	BEZ

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3TKL \| pdb_00003tkl	Download File View File

Crystal structure of the GTP-bound Rab1a in complex with the coiled-coil domain of LidA from Legionella pneumophila

Cheng, W., Yin, K., Lu, D., Li, B., Zhu, D., Chen, Y., Zhang, H., Xu, S., Chai, J., Gu, L.

(2012) PLoS Pathog 8: e1002528-e1002528

Released	2012-06-27
Method	X-RAY DIFFRACTION 2.183 Å
Organisms	Homo sapiens Legionella pneumophila str. Corby
Macromolecule	LidA protein, substrate of the Dot/Icm system (protein) Ras-related protein Rab-1A (protein)
Unique Ligands	GTP, MG

1 to 25 of 135 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1F03 | pdb_00001f03

1F04 | pdb_00001f04

1FI7 | pdb_00001fi7

1FI9 | pdb_00001fi9

1Z5M | pdb_00001z5m

2PE0 | pdb_00002pe0

2PE1 | pdb_00002pe1

2PE2 | pdb_00002pe2

3A0C | pdb_00003a0c

3A0D | pdb_00003a0d

3A0E | pdb_00003a0e

3HHU | pdb_00003hhu

3K49 | pdb_00003k49

3K4E | pdb_00003k4e

3O72 | pdb_00003o72

3Q7J | pdb_00003q7j

3SFV | pdb_00003sfv

3SP4 | pdb_00003sp4

3SPD | pdb_00003spd

3SPL | pdb_00003spl

3TB4 | pdb_00003tb4

3TEF | pdb_00003tef

3TG2 | pdb_00003tg2

3TGV | pdb_00003tgv

3TKL | pdb_00003tkl