RCSB PDB: Search

1ZN6 \| pdb_00001zn6	Download File View File

X-ray Crystal Structure of Protein Q7WLM8 from Bordetella bronchiseptica. Northeast Structural Genomics Consortium Target BoR19.

Kuzin, A.P., Yong, W., Vorobiev, S.M., Xiao, R., Ma, L.-C., Acton, T., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2005-05-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	phage-related conserved hypothetical protein (protein)
Unique Ligands	SO4

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2BDV \| pdb_00002bdv	Download File View File

X-Ray Crystal Structure of Phage-related Protein BB2244 from Bordetella bronchiseptica. Northeast Structural Genomics Consortium Target BoR24.

Forouhar, F., Abashidze, M., Benach, J., Jayaraman, S., Janjua, H., Cooper, B., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2005-11-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	phage-related conserved hypothetical protein, BB2244 (protein)

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2IOU \| pdb_00002iou	Download File View File

Major Tropism Determinant P1 (Mtd-P1) Variant Complexed with Bordetella brochiseptica Virulence Factor Pertactin extracellular domain (Prn-E).

Miller, J.L., Ghosh, P.

(2008) PLoS Biol 6: e131-e131

Released	2007-10-23
Method	X-RAY DIFFRACTION 3.16 Å
Organisms	Bordetella bronchiseptica RB50 Rauchvirus BPP1
Macromolecule	Major Tropism Determinant P1 (protein) Pertactin Extracellular Domain (protein)
Unique Ligands	MG

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2JS4 \| pdb_00002js4	Download File View File

Solution NMR Structure of Bordetella bronchiseptica protein BB2007. Northeast Structural Genomics Consortium target BoR54

Eletsky, A., Sukumaran, D., Wu, Y., Singarapu, K., Parish, D., Xu, D., Wang, D., Nwosu, C., Cunningham, K., Xiao, R., Liu, J., Baran, M.C., Swapna, G.V.T., Acton, T.B., Rost, B., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2007-07-10
Method	SOLUTION NMR
Organisms	Bordetella bronchiseptica RB50
Macromolecule	UPF0434 protein BB2007 (protein)

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2QYC \| pdb_00002qyc	Download File View File

Crystal structure of a dimeric ferredoxin-like protein (bb1511) from bordetella bronchiseptica rb50 at 1.90 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2007-08-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	Ferredoxin-like protein (protein)
Unique Ligands	ACT, CL, EDO

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3BCW \| pdb_00003bcw	Download File View File

Crystal structure of a duf861 family protein with a rmlc-like cupin fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2007-11-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	ACT, EDO, PEG

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3BE3 \| pdb_00003be3	Download File View File

Crystal structure of a protein belonging to pfam DUF1653 from Bordetella bronchiseptica

Tyagi, R., Eswaramoorthy, S., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-11-27
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	SO4

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3BJQ \| pdb_00003bjq	Download File View File

CRYSTAL STRUCTURE OF A PHAGE-RELATED PROTEIN (BB3626) FROM BORDETELLA BRONCHISEPTICA RB50 AT 2.05 A RESOLUTION

Joint Center for Structural Genomics (JCSG)

To be published

Released	2007-12-18
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	Phage-related protein (protein)
Unique Ligands	CL, PG4

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3BYQ \| pdb_00003byq	Download File View File

Crystal structure of a duf1185 family protein (bb2672) from bordetella bronchiseptica rb50 at 1.70 A resolution

Joint Center for Structural Genomics (JCSG)

(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66: 1182-1189

Released	2008-01-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	Uncharacterized protein DUF1185 (protein)
Unique Ligands	CL, EDO, PG4

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3CNV \| pdb_00003cnv	Download File View File

Crystal structure of the ligand-binding domain of a putative GntR-family transcriptional regulator from Bordetella bronchiseptica

Zimmerman, M.D., Xu, X., Cui, H., Filippova, E.V., Savchenko, A., Edwards, A.M., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2008-04-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	Putative GntR-family transcriptional regulator (protein)
Unique Ligands	CL, FLC

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3H1N \| pdb_00003h1n	Download File View File

Crystal structure of probable glutathione S-transferase from Bordetella bronchiseptica RB50

Tan, K., Xu, X., Cui, H., Savchenko, A., Edwards, A.M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2009-05-19
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	Probable glutathione S-transferase (protein)
Unique Ligands	CL, EDO

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4JJ9 \| pdb_00004jj9	Download File View File

Crystal Structure of 5-carboxymethyl-2-hydroxymuconate delta-isomerase

Eswaramoorthy, S., Chamala, S., Evans, B., Foti, F., Gizzi, A., Hillerich, B., Kar, A., Lafleur, J., Seidel, R., Villigas, G., Zencheck, W., Al Obaidi, N., Almo, S.C., Swaminathan, S., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2013-05-01
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	5-carboxymethyl-2-hydroxymuconate delta-isomerase (protein)
Unique Ligands	SO4

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4N4U \| pdb_00004n4u	Download File View File

Crystal structure of ABC transporter solute binding protein BB0719 from Bordetella bronchiseptica RB50, TARGET EFI-510049

Patskovsky, Y., Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N., Stead, M., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Jacobson, M.P., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2015) Biochemistry 54: 909-931

Released	2013-10-23
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	Putative ABC transporter periplasmic solute-binding protein (protein)
Unique Ligands	GOL

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4NQ8 \| pdb_00004nq8	Download File View File

Crystal structure of a trap periplasmic solute binding protein from Bordetella bronchispeptica (bb3421), target EFI-510039, with density modeled as pantoate

Vetting, M.W., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Stead, M., Attonito, J.D., Scott Glenn, A., Chowdhury, S., Evans, B., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2015) Biochemistry 54: 909-931

Released	2014-01-01
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	Putative periplasmic substrate-binding transport protein (protein)
Unique Ligands	CL, PAF, SO4

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4P56 \| pdb_00004p56	Download File View File

CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM BORDETELLA BRONCHISEPTICA, TARGET EFI-510038 (BB2442), WITH BOUND (R)-MANDELATE and (S)-MANDELATE

Vetting, M.W., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Stead, M., Attonito, J.D., Scott Glenn, A., Chowdhury, S., Evans, B., Hillerich, B., Love, J., Seidel, R.D., Whalen, K.L., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2015) Biochemistry 54: 909-931

Released	2014-05-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	Putative extracellular solute-binding protein (protein)
Unique Ligands	PGE, RMN, SMN

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4XFR \| pdb_00004xfr	Download File View File

Crystal structure of a domain of unknown function (DUF1537) from Bordetella bronchiseptica (BB3215), Target EFI-511620, with bound citrate, domain swapped dimer, space group P6522

Vetting, M.W., Al Obaidi, N.F., Toro, R., Morisco, L.L., Benach, J., Wasserman, S.R., Attonito, J.D., Scott Glenn, A., Chamala, S., Chowdhury, S., Lafleur, J., Love, J., Seidel, R.D., Whalen, K.L., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2016) Proc Natl Acad Sci U S A 113: E4161-E4169

Released	2015-01-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	CIT

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4XG0 \| pdb_00004xg0	Download File View File

Crystal structure of a domain of unknown function (DUF1537) from Bordetella bronchiseptica (BB3215), Target EFI-511620, with bound citrate, domain swapped dimer, space group C2221

Vetting, M.W., Al Obaidi, N.F., Toro, R., Morisco, L.L., Benach, J., Wasserman, S.R., Attonito, J.D., Scott Glenn, A., Chamala, S., Chowdhury, S., Lafleur, J., Love, J., Seidel, R.D., Whalen, K.L., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2016) Proc Natl Acad Sci U S A 113: E4161-E4169

Released	2015-03-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	CIT, CL, SO4

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4YIC \| pdb_00004yic	Download File View File

CRYSTAL STRUCTURE OF A TRAP TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM BORDETELLA BRONCHISEPTICA RB50 (BB0280, TARGET EFI-500035) WITH BOUND PICOLINIC ACID

Vetting, M.W., Al Obaidi, N.F., Toro, R., Morisco, L.L., Benach, J., Koss, J., Wasserman, S.R., Attonito, J.D., Scott Glenn, A., Chamala, S., Chowdhury, S., Lafleur, J., Love, J., Seidel, R.D., Whalen, K.L., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2015-04-01
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	TRAP TRANSPORTER SOLUTE BINDING PROTEIN (protein)
Unique Ligands	6PC, ACT, CA, IMD

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4YZZ \| pdb_00004yzz	Download File View File

Crystal structure of a TRAP transporter solute binding protein (IPR025997) from Bordetella bronchiseptica RB50 (BB0280, TARGET EFI-500035) mixed occupancy dimer, copurified calcium and picolinate bound active site versus apo site

Vetting, M.W., Al Obaidi, N.F., Toro, R., Morisco, L.L., Benach, J., Koss, J., Wasserman, S.R., Attonito, J.D., Scott Glenn, A., Chamala, S., Chowdhury, S., Lafleur, J., Love, J., Seidel, R.D., Whalen, K.L., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2015-05-20
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	TRAP TRANSPORTER SOLUTE BINDING PROTEIN (protein)
Unique Ligands	6PC, CA, NHE, PEG

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5BU6 \| pdb_00005bu6	Download File View File

Structure of BpsB deaceylase domain from Bordetella bronchiseptica

Little, D.J., Bamford, N.C., Howell, P.L.

(2015) J Biological Chem 290: 22827-22840

Released	2015-07-29
Method	X-RAY DIFFRACTION 1.951 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	BpsB (PgaB), Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase (protein)
Unique Ligands	EDO, NI, SCN

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5TSA \| pdb_00005tsa	Download File View File

Crystal structure of the Zrt-/Irt-like protein from Bordetella bronchiseptica with bound Zn2+

Zhang, T., Fellner, M., Sui, D., Liu, J., Hu, J.

(2017) Sci Adv 3: e1700344-e1700344

Released	2017-09-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	Membrane protein (protein)
Unique Ligands	CD, ZN

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5TSB \| pdb_00005tsb	Download File View File

Crystal structure of the Zrt-/Irt-like protein from Bordetella bronchiseptica with bound Cd2+

Zhang, T., Fellner, M., Sui, D., Liu, J., Hu, J.

(2017) Sci Adv 3: e1700344-e1700344

Released	2017-09-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	Membrane protein (protein)
Unique Ligands	CD

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6AU1 \| pdb_00006au1	Download File View File

Structure of the PgaB (BpsB) glycoside hydrolase domain from Bordetella bronchiseptica

Little, D.J., Bamford, N.C., Howell, P.L.

(2018) PLoS Pathog 14: e1006998-e1006998

Released	2018-04-18
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	Putative hemin storage protein (protein)
Unique Ligands	CL, EDO, SO4

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8CZJ \| pdb_00008czj	Download File View File

A bacteria Zrt/Irt-like protein in the apo state

Zhang, Y., Hu, J.

(2023) Nat Commun 14: 385-385

Released	2023-02-22
Method	X-RAY DIFFRACTION 2.751 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	Putative membrane protein (protein)
Unique Ligands	MPG, SO4

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8J1M \| pdb_00008j1m	Download File View File

Crystal structure of a crosslinked variant of BbZIP

Zhang, T., Zhang, Y., Sui, D., Hu, J.

(2024) bioRxiv

Released	2024-11-13
Method	X-RAY DIFFRACTION 1.952 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	Putative membrane protein (protein)
Unique Ligands	CD, CL, HG, MPG

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ZN6 | pdb_00001zn6

2BDV | pdb_00002bdv

2IOU | pdb_00002iou

2JS4 | pdb_00002js4

2QYC | pdb_00002qyc

3BCW | pdb_00003bcw

3BE3 | pdb_00003be3

3BJQ | pdb_00003bjq

3BYQ | pdb_00003byq

3CNV | pdb_00003cnv

3H1N | pdb_00003h1n

4JJ9 | pdb_00004jj9

4N4U | pdb_00004n4u

4NQ8 | pdb_00004nq8

4P56 | pdb_00004p56

4XFR | pdb_00004xfr

4XG0 | pdb_00004xg0

4YIC | pdb_00004yic

4YZZ | pdb_00004yzz

5BU6 | pdb_00005bu6

5TSA | pdb_00005tsa

5TSB | pdb_00005tsb

6AU1 | pdb_00006au1

8CZJ | pdb_00008czj

8J1M | pdb_00008j1m