Download MendeleyCrystal structure of a protein belonging to pfam DUF1653 from Bordetella bronchiseptica.
Tyagi, R., Eswaramoorthy, S., Burley, S.K., Swaminathan, S.To be published.
3BE3 | pdb_00003be3
Crystal structure of a protein belonging to pfam DUF1653 from Bordetella bronchiseptica
- PDB DOI: https://doi.org/10.2210/pdb3BE3/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Bordetella bronchiseptica RB50
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2007-11-16 Released: 2007-11-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.04 Å
- R-Value Free: 0.234 (Depositor), 0.230 (DCC)
- R-Value Work: 0.201 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.201 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized protein | 91 | Bordetella bronchiseptica RB50 | Mutation(s): 0 Gene Names: 81430067, BB4950 |  | |
UniProt | |||||
Find proteins for A0A0H3LS10 (Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)) Explore A0A0H3LS10 Go to UniProtKB: A0A0H3LS10 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H3LS10 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.04 Å
- R-Value Free: 0.234 (Depositor), 0.230 (DCC)
- R-Value Work: 0.201 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.201 (Depositor)
Space Group: P 3 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 84.728 | α = 90 |
| b = 84.728 | β = 90 |
| c = 44.582 | γ = 120 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| CBASS | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELX | phasing |
| SHARP | phasing |
| ARP/wARP | model building |
Entry History
Deposition Data
- Released Date: 2007-11-27 Deposition Author(s): Tyagi, R., Eswaramoorthy, S., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2007-11-27
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.3: 2024-10-30
Changes: Data collection, Database references, Structure summary
