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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 205 Structures.

Refinements

Structure Determination Methodology

experimental (205)

Scientific Name of Source Organism

	Homo sapiens (58)
	synthetic construct (14)
	Mus musculus (11)
	Danio rerio (9)
	Methylosinus trichosporium OB3b (9)
	Pseudomonas aeruginosa (4)
	Acinetobacter baylyi (3)
	Amycolatopsis orientalis (3)
	Arenicola marina (3)
	Canavalia ensiformis (3)

More...

Taxonomy

	Eukaryota (102)
	Bacteria (91)
	other sequences (14)
	Riboviria (8)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (202)
	SOLUTION NMR (2)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (205)

Refinement Resolution (Å)

	0.5 - 1.0 (3)
	1.0 - 1.5 (36)
	1.5 - 2.0 (92)
	2.0 - 2.5 (46)
	2.5 - 3.0 (18)
	3.0 - 3.5 (8)

Release Date

	1995 - 1999 (5)
	2000 - 2004 (27)
	2005 - 2009 (36)
	2010 - 2014 (35)
	2015 - 2019 (54)
	2020 - 2024 (48)

Enzyme Classification Name

	Hydrolases (44)
	Oxidoreductases (46)
	Lyases (20)
	Transferases (20)
	Ligases (12)
	Isomerases (2)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (106)
	Cyclic (103)
	Dihedral (7)

SCOP Classification

	All beta proteins (40)
	Alpha and beta proteins (a/b) (36)
	Alpha and beta proteins (a+b) (22)
	All alpha proteins (16)
	Artifacts (27)
	Small proteins (3)
	Multi-domain proteins (alpha and beta) (3)

AllSelected

1 to 25 of 205 Structures

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1A8U \| pdb_00001a8u	Download File View File

CHLOROPEROXIDASE T/BENZOATE COMPLEX

Hofmann, B., Toelzer, S., Pelletier, I., Altenbuchner, J., Van Pee, K.-H., Hecht, H.-J.

(1998) J Mol Biology 279: 889-900

Released	1998-06-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Kitasatospora aureofaciens
Macromolecule	CHLOROPEROXIDASE T (protein)
Unique Ligands	BEZ, SO4

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1DJR \| pdb_00001djr	Download File View File

HEAT-LABILE ENTEROTOXIN B-PENTAMER COMPLEXED WITH M-CARBOXYPHENYL-ALPHA-D-GALACTOSE

Minke, W.E., Pickens, J., Merritt, E.A., Fan, E., Verlinde, C.L.M.J., Hol, W.G.J.

(2000) Acta Crystallogr D Biol Crystallogr 56: 795-804

Released	2000-06-30
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Escherichia coli
Macromolecule	HEAT-LABILE ENTEROTOXIN (protein)
Unique Ligands	BEZ, GLA, GOL

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1GXS \| pdb_00001gxs	Download File View File

Crystal Structure of Hydroxynitrile Lyase from Sorghum bicolor in Complex with Inhibitor Benzoic Acid: a novel cyanogenic enzyme

Lauble, H., Miehlich, B., Foerster, S., Wajant, H., Effenberger, F.

(2002) Biochemistry 41: 12043

Released	2002-10-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Sorghum bicolor
Macromolecule	P-(S)-HYDROXYMANDELONITRILE LYASE CHAIN A (protein) P-(S)-HYDROXYMANDELONITRILE LYASE CHAIN B (protein)
Unique Ligands	BEZ, DKA, NAG
Unique branched monosaccharides	FUL, NAG

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1GYX \| pdb_00001gyx	Download File View File

The Crystal Structure of YdcE, a 4-Oxalocrotonate Tautomerase Homologue from Escherichia coli, Confirms the Structural Basis for Oligomer Diversity

Almrud, J., Kern, A., Wang, S., Czerwinski, R., Johnson, W., Murzin, A., Hackert, M., Whitman, C.

(2002) Biochemistry 41: 12010-12024

Released	2002-10-10
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Escherichia coli K-12
Macromolecule	HYPOTHETICAL PROTEIN YDCE (protein)
Unique Ligands	BEZ, EPE

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1H4O \| pdb_00001h4o	Download File View File

Monoclinic form of human peroxiredoxin 5

Declercq, J.P., Evrard, C.

(2001) J Mol Biology 311: 751

Released	2001-10-23
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	PEROXIREDOXIN 5 (protein)
Unique Ligands	BEZ

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1HD2 \| pdb_00001hd2	Download File View File

Human peroxiredoxin 5

Declercq, J.P., Evrard, C.

(2001) J Mol Biology 311: 751

Released	2001-08-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	PEROXIREDOXIN 5 RESIDUES 54-214 (protein)
Unique Ligands	BEZ, BR

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1HKQ \| pdb_00001hkq	Download File View File

PPS10 plasmid DNA replication initiator protein RepA. Replication inactive, dimeric N-terminal domain.

Giraldo, R., Fernandez-Tornero, C., Evans, P.R., Diaz-Orejas, R., Romero, A.

(2003) Nat Struct Biol 10: 496

Released	2003-05-29
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Pseudomonas savastanoi
Macromolecule	REPLICATION PROTEIN (protein)
Unique Ligands	BEZ, HG, PO4

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1HZ4 \| pdb_00001hz4	Download File View File

CRYSTAL STRUCTURE OF TRANSCRIPTION FACTOR MALT DOMAIN III

Steegborn, C., Danot, O., Clausen, T., Huber, R.

(2001) Structure 9: 1051-1060

Released	2001-11-28
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Escherichia coli
Macromolecule	MALT REGULATORY PROTEIN (protein)
Unique Ligands	BEZ, GOL, SO4

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1I69 \| pdb_00001i69	Download File View File

CRYSTAL STRUCTURE OF THE REDUCED FORM OF OXYR

Choi, H., Kim, S., Ryu, S.

(2001) Cell 105: 103-113

Released	2001-09-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	HYDROGEN PEROXIDE-INDUCIBLE GENES ACTIVATOR (protein)
Unique Ligands	BEZ

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1I7Q \| pdb_00001i7q	Download File View File

ANTHRANILATE SYNTHASE FROM S. MARCESCENS

Spraggon, G., Kim, C., Nguyen-Huu, X., Yee, M.-C., Yanofsky, C., Mills, S.E.

(2001) Proc Natl Acad Sci U S A 98: 6021-6026

Released	2001-05-16
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Serratia marcescens
Macromolecule	ANTHRANILATE SYNTHASE (protein) TRPG (protein)
Unique Ligands	BEZ, GLU, MG, PYR

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1JU4 \| pdb_00001ju4	Download File View File

BACTERIAL COCAINE ESTERASE COMPLEX WITH PRODUCT

Larsen, N.A., Turner, J.M., Stevens, J., Rosser, S.J., Basran, A., Lerner, R.A., Bruce, N.C., Wilson, I.A.

(2002) Nat Struct Biol 9: 17-21

Released	2001-12-21
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Rhodococcus sp. MB1
Macromolecule	cocaine esterase (protein)
Unique Ligands	BEZ

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1KIF \| pdb_00001kif	Download File View File

D-AMINO ACID OXIDASE FROM PIG KIDNEY

Todone, F., Mattevi, A.

(1996) Proc Natl Acad Sci U S A 93: 7496-7501

Released	1996-07-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Sus scrofa
Macromolecule	D-AMINO ACID OXIDASE (protein)
Unique Ligands	BEZ, FAD

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1KQB \| pdb_00001kqb	Download File View File

Structure of Nitroreductase from E. cloacae complex with inhibitor benzoate

Haynes, C.A., Koder, R.L., Miller, A.F., Rodgers, D.W.

(2002) J Biological Chem 277: 11513-11520

Released	2002-02-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Enterobacter cloacae
Macromolecule	OXYGEN-INSENSITIVE NAD(P)H NITROREDUCTASE (protein)
Unique Ligands	BEZ, FMN

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1L7Q \| pdb_00001l7q	Download File View File

Ser117Ala Mutant of Bacterial Cocaine Esterase cocE

Turner, J.M., Larsen, N.A., Basran, A., Barbas III, C.F., Bruce, N.C., Wilson, I.A., Lerner, R.A.

(2002) Biochemistry 41: 12297-12307

Released	2003-02-11
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Rhodococcus sp. MB1
Macromolecule	cocaine esterase (protein)
Unique Ligands	BEZ

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1NCW \| pdb_00001ncw	Download File View File

Cationic Cyclization Antibody 4C6 in Complex with Benzoic Acid

Zhu, X., Wilson, I.A.

(2003) J Mol Biology 329: 69-83

Released	2003-05-13
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Mus musculus
Macromolecule	IMMUNOGLOBULIN IGG2A (protein)
Unique Ligands	BEZ, GOL

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1OC3 \| pdb_00001oc3	Download File View File

HUMAN PEROXIREDOXIN 5

Evrard, C., Declercq, J.-P.

(2004) J Mol Biology 337: 1079

Released	2004-02-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	PEROXIREDOXIN 5 (protein)
Unique Ligands	BEZ

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1ONI \| pdb_00001oni	Download File View File

Crystal structure of a human p14.5, a translational inhibitor reveals different mode of ligand binding near the invariant residues of the Yjgf/UK114 protein family

Manjasetty, B.A., Delbrueck, H., Mueller, U., Erdmann, M.F., Heinemann, U.

(2004) Proteins 54: 797-800

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	14.5 kDa translational inhibitor protein (protein)
Unique Ligands	BEZ

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1RED \| pdb_00001red	Download File View File

ENDO-1,4-BETA-XYLANASE II COMPLEX WITH 4,5-EPOXYPENTYL-BETA-D-XYLOSIDE

Rouvinen, J., Havukainen, R., Torronen, A.

(1996) Biochemistry 35: 9617-9624

Released	1997-01-11
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Trichoderma reesei
Macromolecule	ENDO-1,4-BETA-XYLANASE II (protein)
Unique Ligands	BEZ, C5X

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1REE \| pdb_00001ree	Download File View File

ENDO-1,4-BETA-XYLANASE II COMPLEX WITH 3,4-EPOXYBUTYL-BETA-D-XYLOSIDE

Rouvinen, J., Havukainen, R., Torronen, A.

(1996) Biochemistry 35: 9617-9624

Released	1997-01-11
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Trichoderma reesei
Macromolecule	ENDO-1,4-BETA-XYLANASE II (protein)
Unique Ligands	07E, BEZ

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1REF \| pdb_00001ref	Download File View File

ENDO-1,4-BETA-XYLANASE II COMPLEX WITH 2,3-EPOXYPROPYL-BETA-D-XYLOSIDE

Rouvinen, J., Havukainen, R., Torronen, A.

(1996) Biochemistry 35: 9617-9624

Released	1997-01-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Trichoderma reesei
Macromolecule	ENDO-1,4-BETA-XYLANASE II (protein)
Unique Ligands	BEZ, C3X

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1RU9 \| pdb_00001ru9	Download File View File

Crystal Structure (A) of u.v.-irradiated cationic cyclization antibody 4C6 Fab at pH 4.6 with a data set collected in-house.

Zhu, X., Wentworth Jr., P., Wentworth, A.D., Eschenmoser, A., Lerner, R.A., Wilson, I.A.

(2004) Proc Natl Acad Sci U S A 110: 2247-2252

Released	2004-03-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	immunoglobulin igg2a, heavy chain (protein) immunoglobulin igg2a, light chain (protein)
Unique Ligands	ACT, BEZ, GOL

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1RUA \| pdb_00001rua	Download File View File

Crystal structure (B) of u.v.-irradiated cationic cyclization antibody 4C6 fab at pH 4.6 with a data set collected at SSRL beamline 11-1.

Zhu, X., Wentworth Jr., P., Wentworth, A.D., Eschenmoser, A., Lerner, R.A., Wilson, I.A.

(2004) Proc Natl Acad Sci U S A 110: 2247-2252

Released	2004-03-02
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Mus musculus
Macromolecule	immunoglobulin igg2a, heavy chain (protein) immunoglobulin igg2a, light chain (protein)
Unique Ligands	ACT, BEZ, GOL

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1RUK \| pdb_00001ruk	Download File View File

Crystal structure (C) of native cationic cyclization antibody 4C6 fab at pH 4.6 with a data set collected at SSRL beamline 9-1

Zhu, X., Wentworth Jr., P., Wentworth, A.D., Eschenmoser, A., Lerner, R.A., Wilson, I.A.

(2004) Proc Natl Acad Sci U S A 110: 2247-2252

Released	2004-03-02
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Mus musculus
Macromolecule	immunoglobulin igg2a, heavy chain (protein) immunoglobulin igg2a, light chain (protein)
Unique Ligands	ACT, BEZ, GOL

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1RUL \| pdb_00001rul	Download File View File

Crystal Structure (D) of u.v.-irradiated cationic cyclization antibody 4C6 Fab at pH 5.6 with a data set collected at SSRL beamline 11-1.

Zhu, X., Wentworth Jr., P., Wentworth, A.D., Eschenmoser, A., Lerner, R.A., Wilson, I.A.

(2004) Proc Natl Acad Sci U S A 110: 2247-2252

Released	2004-03-02
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Mus musculus
Macromolecule	immunoglobulin igg2a, heavy chain (protein) immunoglobulin igg2a, light chain (protein)
Unique Ligands	ACT, BEZ, GOL

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1RUM \| pdb_00001rum	Download File View File

Crystal structure (F) of H2O2-soaked cationic cyclization antibody 4C6 fab at pH 8.5 with a data set collected at SSRL beamline 9-1.

Zhu, X., Wentworth Jr., P., Wentworth, A.D., Eschenmoser, A., Lerner, R.A., Wilson, I.A.

(2004) Proc Natl Acad Sci U S A 110: 2247-2252

Released	2004-03-02
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Mus musculus
Macromolecule	immunoglobulin igg2a, heavy chain (protein) immunoglobulin igg2a, light chain (protein)
Unique Ligands	BEZ, GOL

1 to 25 of 205 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A8U | pdb_00001a8u

1DJR | pdb_00001djr

1GXS | pdb_00001gxs

1GYX | pdb_00001gyx

1H4O | pdb_00001h4o

1HD2 | pdb_00001hd2

1HKQ | pdb_00001hkq

1HZ4 | pdb_00001hz4

1I69 | pdb_00001i69

1I7Q | pdb_00001i7q

1JU4 | pdb_00001ju4

1KIF | pdb_00001kif

1KQB | pdb_00001kqb

1L7Q | pdb_00001l7q

1NCW | pdb_00001ncw

1OC3 | pdb_00001oc3

1ONI | pdb_00001oni

1RED | pdb_00001red

1REE | pdb_00001ree

1REF | pdb_00001ref

1RU9 | pdb_00001ru9

1RUA | pdb_00001rua

1RUK | pdb_00001ruk

1RUL | pdb_00001rul

1RUM | pdb_00001rum