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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "de Munnik, M."

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Mycobacterium tuberculosis (10)
	Corynebacterium jeikeium (2)

Taxonomy

Bacteria (10)

Experimental Method

X-RAY DIFFRACTION (10)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (6)
	2.5 - 3.0 (1)

Release Date

2020 - 2024 (10)

Enzyme Classification Name

Transferases (10)

Symmetry Type

Asymmetric (10)

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1 to 10 of 10 Structures

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8A1J \| pdb_00008a1j	Download File View File

Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with maleimide analogue 3

de Munnik, M., Lang, P.A., Brem, J., Schofield, C.J.

(2023) Chem Sci 14: 7262-7278

Released	2023-06-14
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	L,D-transpeptidase 2 (protein)
Unique Ligands	DMS, EDO, KSU

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8A1K \| pdb_00008a1k	Download File View File

Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with ebsulfur analogue 15

de Munnik, M., Lang, P.A., Brem, J., Schofield, C.J.

(2023) Chem Sci 14: 7262-7278

Released	2023-06-14
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	L,D-transpeptidase 2 (protein)
Unique Ligands	DMS, EDO, KT6, NA

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8A1L \| pdb_00008a1l	Download File View File

Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with alpha-chloro ketone 2

de Munnik, M., Lang, P.A., Brem, J., Schofield, C.J.

(2023) Chem Sci 14: 7262-7278

Released	2023-06-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	L,D-transpeptidase 2 (protein)
Unique Ligands	CL, DMS, EDO, GOL, KS9, NA

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8A1M \| pdb_00008a1m	Download File View File

Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with maleimide analogue 4

de Munnik, M., Lang, P.A., Brem, J., Schofield, C.J.

(2023) Chem Sci 14: 7262-7278

Released	2023-06-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	L,D-transpeptidase 2 (protein)
Unique Ligands	CL, DMS, EDO, GOL, KUL, NA

Explore in 3D

8A1N \| pdb_00008a1n	Download File View File

Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with fumaryl amide analogue 13

de Munnik, M., Lang, P.A., Brem, J., Schofield, C.J.

(2023) Chem Sci 14: 7262-7278

Released	2023-06-14
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	L,D-transpeptidase 2 (protein)
Unique Ligands	DMS, EDO, GOL, KUS, NA

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8A1O \| pdb_00008a1o	Download File View File

Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with acrylamide analogue 8

de Munnik, M., Lang, P.A., Brem, J., Schofield, C.J.

(2023) Chem Sci 14: 7262-7278

Released	2023-06-14
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	L,D-transpeptidase 2 (protein)
Unique Ligands	CL, DMS, EDO, GOL, KTI, NA

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8AHO \| pdb_00008aho	Download File View File

Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with cyanamide analogue 31

de Munnik, M., Lang, P.A., Brem, J., Schofield, C.J.

(2023) Chem Sci 14: 7262-7278

Released	2023-08-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Transpeptidase,Lipoprotein LppS (protein)
Unique Ligands	CL, DMS, NA, NO3

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8BK3 \| pdb_00008bk3	Download File View File

Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with diepoxide ketone 1

de Munnik, M., Schofield, C.J.

(2023) Chem Commun (Camb) 59: 12859-12862

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	L,D-transpeptidase 2 (protein)
Unique Ligands	DMS, EDO, GOL, NO3, QXU

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8PXY \| pdb_00008pxy	Download File View File

Crystal structure of the transpeptidase LdtMt2 C354S mutant from Mycobacterium tuberculosis in complex with natural substrate

de Munnik, M., Schofield, C.J.

(2024) Commun Biol 7: 1173-1173

Released	2024-08-07
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Corynebacterium jeikeium Mycobacterium tuberculosis
Macromolecule	L,D-transpeptidase 2 (protein) Peptidoglycan tetrapeptide (protein)
Unique Ligands	CL, EPE
Unique branched monosaccharides	MUB, NAG

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8PXZ \| pdb_00008pxz	Download File View File

Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with natural substrate

de Munnik, M., Schofield, C.J.

(2024) Commun Biol 7: 1173-1173

Released	2024-08-07
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Corynebacterium jeikeium Mycobacterium tuberculosis
Macromolecule	L,D-transpeptidase 2 (protein) Peptidoglycan dipeptide (protein) Peptidoglycan tripeptide (protein)
Unique Ligands	CL, DAL, EDO

1 to 10 of 10 Structures

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8A1J | pdb_00008a1j

Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with maleimide analogue 3

8A1K | pdb_00008a1k

Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with ebsulfur analogue 15

8A1L | pdb_00008a1l

Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with alpha-chloro ketone 2

8A1M | pdb_00008a1m

Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with maleimide analogue 4

8A1N | pdb_00008a1n

Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with fumaryl amide analogue 13

8A1O | pdb_00008a1o

Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with acrylamide analogue 8

8AHO | pdb_00008aho

Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with cyanamide analogue 31

8BK3 | pdb_00008bk3

Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with diepoxide ketone 1

8PXY | pdb_00008pxy

Crystal structure of the transpeptidase LdtMt2 C354S mutant from Mycobacterium tuberculosis in complex with natural substrate

8PXZ | pdb_00008pxz

Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with natural substrate

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

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Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

8A1J | pdb_00008a1j

8A1K | pdb_00008a1k

8A1L | pdb_00008a1l

8A1M | pdb_00008a1m

8A1N | pdb_00008a1n

8A1O | pdb_00008a1o

8AHO | pdb_00008aho

8BK3 | pdb_00008bk3

8PXY | pdb_00008pxy

8PXZ | pdb_00008pxz