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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Belardinelli, R."

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Search Summary

This query matches 23 Structures.

Refinements

Structure Determination Methodology

experimental (23)

Scientific Name of Source Organism

	Thermus thermophilus HB8 (21)
	Geobacillus stearothermophilus (2)

Taxonomy

Bacteria (23)

Experimental Method

	X-RAY DIFFRACTION (21)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (23)
	RNA (10)

Refinement Resolution (Å)

	1.5 - 2.0 (9)
	2.0 - 2.5 (2)
	3.0 - 3.5 (6)
	3.5 - 4.0 (4)

Release Date

	2005 - 2009 (9)
	2010 - 2014 (12)
	2015 - 2019 (2)

Enzyme Classification Name

Transferases (9)

Symmetry Type

	Asymmetric (21)
	Cyclic (2)

SCOP Classification

	Alpha and beta proteins (a/b) (7)
	Artifacts (2)

AllSelected

1 to 23 of 23 Structures

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2LKC \| pdb_00002lkc	Download File View File

Free B.st IF2-G2

Wienk, H., Tishchenko, E., Belardinelli, R., Tomaselli, S., Dongre, R., Spurio, R., Folkers, G.E., Gualerzi, C.O., Boelens, R.

(2012) J Biological Chem 287: 10922-10932

Released	2012-02-15
Method	SOLUTION NMR
Organisms	Geobacillus stearothermophilus
Macromolecule	Translation initiation factor IF-2 (protein)

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2LKD \| pdb_00002lkd	Download File View File

IF2-G2 GDP complex

Wienk, H., Tishchenko, E., Belardinelli, R., Tomaselli, S., Dongre, R., Spurio, R., Folkers, G.E., Gualerzi, C.O., Boelens, R.

(2012) J Biological Chem 287: 10922-10932

Released	2012-02-15
Method	SOLUTION NMR
Organisms	Geobacillus stearothermophilus
Macromolecule	Translation initiation factor IF-2 (protein)
Unique Ligands	GDP

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3FUT \| pdb_00003fut	Download File View File

Apo-form of T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in space group P21212

Demirci, H., Belardinelli, R., Seri, E., Gregory, S.T., Gualerzi, C., Dahlberg, A.E., Jogl, G.

(2009) J Mol Biology 388: 271-282

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Dimethyladenosine transferase (protein)

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3FUU \| pdb_00003fuu	Download File View File

T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in complex with Adenosine in space group P212121

Demirci, H., Belardinelli, R., Seri, E., Gregory, S.T., Gualerzi, C., Dahlberg, A.E., Jogl, G.

(2009) J Mol Biology 388: 271-282

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Dimethyladenosine transferase (protein)
Unique Ligands	ADN

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3FUV \| pdb_00003fuv	Download File View File

Apo-form of T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in space group P43212

Demirci, H., Belardinelli, R., Seri, E., Gregory, S.T., Gualerzi, C., Dahlberg, A.E., Jogl, G.

(2009) J Mol Biology 388: 271-282

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Dimethyladenosine transferase (protein)

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3FUW \| pdb_00003fuw	Download File View File

T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in complex with 5'-methylthioadenosine in space group P212121

Demirci, H., Belardinelli, R., Seri, E., Gregory, S.T., Gualerzi, C., Dahlberg, A.E., Jogl, G.

(2009) J Mol Biology 388: 271-282

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Dimethyladenosine transferase (protein)
Unique Ligands	MTA

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3FUX \| pdb_00003fux	Download File View File

T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in complex with 5'-methylthioadenosine in space group P212121

Demirci, H., Belardinelli, R., Seri, E., Gregory, S.T., Gualerzi, C., Dahlberg, A.E., Jogl, G.

(2009) J Mol Biology 388: 271-282

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Dimethyladenosine transferase (protein)
Unique Ligands	MTA

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3G88 \| pdb_00003g88	Download File View File

T. thermophilus 16S rRNA G527 methyltransferase in complex with AdoMet in space group P61

Demirci, H., Belardinelli, R., Gregory, S.T., Gualerzi, C., Dahlberg, A.E., Jogl, G.

(2009) RNA 15: 1693-1704

Released	2009-06-30
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Ribosomal RNA small subunit methyltransferase G (protein)
Unique Ligands	PEG, SAM

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3G89 \| pdb_00003g89	Download File View File

T. thermophilus 16S rRNA G527 methyltransferase in complex with AdoMet and AMP in space group P61

Demirci, H., Gregory, S.T., Belardinelli, R., Gualerzi, C., Dahlberg, A.E., Jogl, G.

(2009) RNA 15: 1693-1704

Released	2009-06-30
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Ribosomal RNA small subunit methyltransferase G (protein)
Unique Ligands	AMP, SAM

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3G8A \| pdb_00003g8a	Download File View File

T. thermophilus 16S rRNA G527 methyltransferase in complex with AdoHcy in space group P61

Demirci, H., Gregory, S.T., Belardinelli, R., Gualerzi, C., Dahlberg, A.E., Jogl, G.

(2009) RNA 15: 1693-1704

Released	2009-06-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Ribosomal RNA small subunit methyltransferase G (protein)
Unique Ligands	SAH

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3G8B \| pdb_00003g8b	Download File View File

T. thermophilus 16S rRNA G527 methyltransferase in complex with AdoMet in space group I222

Demirci, H., Gregory, S.T., Belardinelli, R., Gualerzi, C., Dahlberg, A.E., Jogl, G.

(2009) RNA 15: 1693-1704

Released	2009-06-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Ribosomal RNA small subunit methyltransferase G (protein)
Unique Ligands	SAM, SO4

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3OTO \| pdb_00003oto	Download File View File

Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)

Demirci, H., Murphy IV, F., Belardinelli, R., Kelley, A.C., Ramakrishnan, V., Gregory, S.T., Dahlberg, A.E., Jogl, G.

(2010) RNA 16: 2319-2324

Released	2010-09-29
Method	X-RAY DIFFRACTION 3.69 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	K, MG, ZN

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4LF4 \| pdb_00004lf4	Download File View File

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Demirci, H., Belardinelli, R., Carr, J., Murphy IV, F., Jogl, G., Dahlberg, A.E., Gregory, S.T.

(2013) To be published

Released	2014-07-02
Method	X-RAY DIFFRACTION 3.3421 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	K, LLL, MG, ZN

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4LF5 \| pdb_00004lf5	Download File View File

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Demirci, H., Belardinelli, R., Carr, J., Murphy IV, F., Jogl, G., Dahlberg, A.E., Gregory, S.T.

(2013) To be published

Released	2014-07-02
Method	X-RAY DIFFRACTION 3.753 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	HYG, K, MG, ZN

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4LF6 \| pdb_00004lf6	Download File View File

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Demirci, H., Belardinelli, R., Carr, J., Murphy IV, F., Jogl, G., Dahlberg, A.E., Gregory, S.T.

(2013) To be published

Released	2014-07-02
Method	X-RAY DIFFRACTION 3.3052 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	K, MG, NMY, ZN

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4LF7 \| pdb_00004lf7	Download File View File

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Demirci, H., Belardinelli, R., Carr, J., Murphy IV, F., Jogl, G., Dahlberg, A.E., Gregory, S.T.

(2013) To be published

Released	2014-07-02
Method	X-RAY DIFFRACTION 3.1484 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	K, MG, PAR, ZN

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4LF8 \| pdb_00004lf8	Download File View File

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Demirci, H., Belardinelli, R., Carr, J., Murphy IV, F., Jogl, G., Dahlberg, A.E., Gregory, S.T.

(2013) To be published

Released	2014-07-02
Method	X-RAY DIFFRACTION 3.1484 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	K, MG, PAR, ZN

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4LF9 \| pdb_00004lf9	Download File View File

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Demirci, H., Belardinelli, R., Carr, J., Murphy IV, F., Jogl, G., Dahlberg, A.E., Gregory, S.T.

(2013) To be published

Released	2014-07-02
Method	X-RAY DIFFRACTION 3.2811 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	K, LLL, MG, ZN

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4LFA \| pdb_00004lfa	Download File View File

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Demirci, H., Belardinelli, R., Carr, J., Murphy IV, F., Jogl, G., Dahlberg, A.E., Gregory, S.T.

(2013) To be published

Released	2014-07-02
Method	X-RAY DIFFRACTION 3.6461 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	HYG, K, MG, ZN

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4LFB \| pdb_00004lfb	Download File View File

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Demirci, H., Belardinelli, R., Carr, J., Murphy IV, F., Jogl, G., Dahlberg, A.E., Gregory, S.T.

(2013) To be published

Released	2014-07-02
Method	X-RAY DIFFRACTION 3.009 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	K, MG, NMY, ZN

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4LFC \| pdb_00004lfc	Download File View File

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Demirci, H., Belardinelli, R., Carr, J., Murphy IV, F., Jogl, G., Dahlberg, A.E., Gregory, S.T.

(2013) To be published

Released	2014-07-02
Method	X-RAY DIFFRACTION 3.602 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	K, MG, TOY, ZN

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4X3L \| pdb_00004x3l	Download File View File

Crystal Structure of TTHA0275 from Thermus thermophilus (HB8) in complex with 5'-methylthioadenosine in space group P21212

Demirci, H., Belardinelli, R., Jogl, G.

To be published

Released	2016-01-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermus thermophilus HB8
Macromolecule	RNA 2'-O ribose methyltransferase (protein)
Unique Ligands	CL, MTA

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4X3M \| pdb_00004x3m	Download File View File

Crystal Structure of TTHA0275 from Thermus thermophilus (HB8) in complex with Adenosine in space group P212121

Demirci, H., Belardinelli, R., Jogl, G.

To be published

Released	2015-11-11
Method	X-RAY DIFFRACTION 1.851 Å
Organisms	Thermus thermophilus HB8
Macromolecule	RNA 2'-O ribose methyltransferase (protein)
Unique Ligands	ADN, K, PO4

1 to 23 of 23 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2LKC | pdb_00002lkc

2LKD | pdb_00002lkd

3FUT | pdb_00003fut

3FUU | pdb_00003fuu

3FUV | pdb_00003fuv

3FUW | pdb_00003fuw

3FUX | pdb_00003fux

3G88 | pdb_00003g88

3G89 | pdb_00003g89

3G8A | pdb_00003g8a

3G8B | pdb_00003g8b

3OTO | pdb_00003oto

4LF4 | pdb_00004lf4

4LF5 | pdb_00004lf5

4LF6 | pdb_00004lf6

4LF7 | pdb_00004lf7

4LF8 | pdb_00004lf8

4LF9 | pdb_00004lf9

4LFA | pdb_00004lfa

4LFB | pdb_00004lfb

4LFC | pdb_00004lfc

4X3L | pdb_00004x3l

4X3M | pdb_00004x3m