Download MendeleyCrystal Structure of human Spindlin1-HBx complex
Liu, W., Li, H.T.To be published.
8GTX
Crystal Structure of human Spindlin1-HBx complex
- PDB DOI: https://doi.org/10.2210/pdb8GTX/pdb
- Classification: STRUCTURAL PROTEIN
- Organism(s): Homo sapiens, synthetic construct
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2022-09-09 Released: 2023-09-13
- Funding Organization(s): National Natural Science Foundation of China (NSFC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.197
- R-Value Work: 0.163
- R-Value Observed: 0.165
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Spindlin-1 | 218 | Homo sapiens | Mutation(s): 0 Gene Names: SPIN1, OCR, SPIN |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9Y657 (Homo sapiens) Explore Q9Y657 Go to UniProtKB: Q9Y657 | |||||
PHAROS: Q9Y657 GTEx: ENSG00000106723 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9Y657 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HBx | 20 | synthetic construct | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q69607 (Hepatitis B virus genotype F2 subtype adw4q (isolate Senegal/9203)) Explore Q69607 Go to UniProtKB: Q69607 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q69607 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL (Subject of Investigation/LOI) Query on GOL | C [auth A], D [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.197
- R-Value Work: 0.163
- R-Value Observed: 0.165
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 47.788 | α = 90 |
| b = 67.096 | β = 90 |
| c = 93.695 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data scaling |
| PHENIX | refinement |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China (NSFC) | China | 92153302 |
Revision History (Full details and data files)
- Version 1.0: 2023-09-13
Type: Initial release
