6ERM

HIV Hexamer with ligand

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.183 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history. 


Literature

HIV hexamer

James, L.C.

To be published.

Macromolecules
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(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Gag polyprotein219Human immunodeficiency virus 1Mutation(s): 0 
Gene Names: gag
UniProt
Find proteins for B6DRA0 (Human immunodeficiency virus type 1)
Explore B6DRA0 
Go to UniProtKB:  B6DRA0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupB6DRA0
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
AZT
Query on AZT
Download Ideal Coordinates CCD File 
B [auth A]3'-AZIDO-3'-DEOXYTHYMIDINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
GLWHPRRGGYLLRV-XLPZGREQSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.183 
  • Space Group: P 6
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 91.039α = 90
b = 91.039β = 90
c = 56.534γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


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Entry History 

Deposition Data

  • Released Date: 2018-11-07 
    • Deposition Author(s): James, L.C.

Revision History  (Full details and data files)

  • Version 1.0: 2018-11-07
    Type: Initial release
  • Version 1.1: 2024-01-17
    Changes: Data collection, Database references, Derived calculations, Refinement description