Download MendeleySnapshort of Vibrio FadR-ligand complex structure reveals a new mechanism for bacterial fatty acid sensing
Feng, Y.J., Lin, Y., Li, D.F., Zhang, H.M., Gao, R.S., Bi, L.J., Wang, S.H.To be published.
5XGF | pdb_00005xgf
The fatty acid-responsive FadR repressor of Vibrio alginolyticus
- PDB DOI: https://doi.org/10.2210/pdb5XGF/pdb
- Entry: 5XGF supersedes: 5DV1
- Classification: TRANSCRIPTION
- Organism(s): Vibrio diabolicus E0666
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2017-04-13 Released: 2017-05-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.256 (Depositor), 0.260 (DCC)
- R-Value Work: 0.218 (Depositor), 0.220 (DCC)
- R-Value Observed: 0.222 (Depositor)
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Fatty acid metabolism regulator protein | 300 | Vibrio diabolicus E0666 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for A0A0H0Y8X2 (Vibrio alginolyticus) Explore A0A0H0Y8X2 Go to UniProtKB: A0A0H0Y8X2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H0Y8X2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NI Query on NI | B [auth A] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.256 (Depositor), 0.260 (DCC)
- R-Value Work: 0.218 (Depositor), 0.220 (DCC)
- R-Value Observed: 0.222 (Depositor)
Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 76 | α = 90 |
| b = 76 | β = 90 |
| c = 144.41 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2017-05-31 Deposition Author(s): Lin, Y., Li, D.F., Feng, Y.J.
- This entry supersedes: 5DV1
Revision History (Full details and data files)
- Version 1.0: 2017-05-31
Type: Initial release - Version 1.1: 2023-11-22
Changes: Data collection, Database references, Derived calculations, Refinement description
