Download MendeleyCrystal structure of an uncharacterized amidohydrolase CAC3332 from Clostridium acetobutylicum.
Malashkevich, V.N., Toro, R., Ramagopal, U.A., Bonanno, J.B., Meyer, A., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3CJP | pdb_00003cjp
Crystal structure of an uncharacterized amidohydrolase CAC3332 from Clostridium acetobutylicum
- PDB DOI: https://doi.org/10.2210/pdb3CJP/pdb
- Classification: HYDROLASE
- Organism(s): Clostridium acetobutylicum ATCC 824
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-03-13 Released: 2008-03-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.241 (Depositor), 0.240 (DCC)
- R-Value Work: 0.184 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.187 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Predicted amidohydrolase, dihydroorotase family | 272 | Clostridium acetobutylicum ATCC 824 | Mutation(s): 0 Gene Names: CA_C3337 |  | |
UniProt | |||||
Find proteins for Q97DY3 (Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)) Explore Q97DY3 Go to UniProtKB: Q97DY3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q97DY3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | C [auth A], D [auth A], E [auth B], F [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.241 (Depositor), 0.240 (DCC)
- R-Value Work: 0.184 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.187 (Depositor)
Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 47.628 | α = 90 |
| b = 77.273 | β = 96.09 |
| c = 72.661 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| SHELX | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| CBASS | data collection |
| HKL-2000 | data reduction |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2008-03-25 Deposition Author(s): Malashkevich, V.N., Toro, R., Ramagopal, U.A., Bonanno, J.B., Meyer, A., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2008-03-25
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2018-11-14
Changes: Data collection, Structure summary - Version 1.4: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.5: 2024-02-21
Changes: Data collection, Database references
