Download MendeleyCrystal structure of the GAF domain from Acinetobacter phosphoenolpyruvate-protein phosphotransferase.
Cuff, M.E., Shackelford, G., Kim, Y., Joachimiak, A.To be published.
3CI6 | pdb_00003ci6
Crystal structure of the GAF domain from Acinetobacter phosphoenolpyruvate-protein phosphotransferase
- PDB DOI: https://doi.org/10.2210/pdb3CI6/pdb
- Classification: TRANSFERASE
- Organism(s): Acinetobacter baylyi ADP1
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2008-03-10 Released: 2008-05-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.196 (Depositor), 0.203 (DCC)
- R-Value Work: 0.168 (Depositor), 0.176 (DCC)
- R-Value Observed: 0.170 (Depositor)
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phosphoenolpyruvate-protein phosphotransferase | 171 | Acinetobacter baylyi ADP1 | Mutation(s): 0 Gene Names: ptsP, ACIAD0454 EC: 2.7.3.9 |  | |
UniProt | |||||
Find proteins for Q6FEW8 (Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)) Explore Q6FEW8 Go to UniProtKB: Q6FEW8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6FEW8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| P4G Query on P4G | C [auth A], F [auth B] | 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE C8 H18 O3 RRQYJINTUHWNHW-UHFFFAOYSA-N |  | ||
| PEG Query on PEG | D [auth A], G [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| GOL Query on GOL | E [auth A], H [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.196 (Depositor), 0.203 (DCC)
- R-Value Work: 0.168 (Depositor), 0.176 (DCC)
- R-Value Observed: 0.170 (Depositor)
Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 39.081 | α = 90 |
| b = 54.992 | β = 90 |
| c = 124.118 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| MLPHARE | phasing |
| DM | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
| SHELXD | phasing |
| SHELXE | model building |
| SOLVE | phasing |
| RESOLVE | phasing |
| ARP/wARP | model building |
| CCP4 | phasing |
| O | model building |
| Coot | model building |
Entry History
Deposition Data
- Released Date: 2008-05-13 Deposition Author(s): Cuff, M.E., Shackelford, G., Kim, Y., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2008-05-13
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2024-10-09
Changes: Data collection, Database references, Derived calculations, Structure summary
