Download MendeleyCrystal structure of HTH-type transcriptional regulator pksA related protein from Rhodococcus sp. RHA1
Nocek, B., Evdokimova, E., Kagan, O., Savchenko, A., Edwards, A., Joachimiak, A.To be published.
2GFN | pdb_00002gfn
Crystal structure of HTH-type transcriptional regulator pksA related protein from Rhodococcus sp. RHA1
- PDB DOI: https://doi.org/10.2210/pdb2GFN/pdb
- Classification: TRANSCRIPTION
- Organism(s): Rhodococcus jostii RHA1
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2006-03-22 Released: 2006-04-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.215 (Depositor), 0.214 (DCC)
- R-Value Work: 0.173 (Depositor), 0.173 (DCC)
- R-Value Observed: 0.175 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HTH-type transcriptional regulator pksA related protein | 209 | Rhodococcus jostii RHA1 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q0S7R9 (Rhodococcus jostii (strain RHA1)) Explore Q0S7R9 Go to UniProtKB: Q0S7R9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q0S7R9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | C [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.215 (Depositor), 0.214 (DCC)
- R-Value Work: 0.173 (Depositor), 0.173 (DCC)
- R-Value Observed: 0.175 (Depositor)
Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 56.475 | α = 90 |
| b = 52.768 | β = 91.05 |
| c = 59.818 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-2000 | data scaling |
| HKL-3000 | phasing |
| SHELXD | phasing |
| SHELXE | model building |
| MLPHARE | phasing |
| DM | phasing |
| SOLVE | phasing |
| RESOLVE | phasing |
| Coot | model building |
| CCP4 | phasing |
Entry History
Deposition Data
- Released Date: 2006-04-25 Deposition Author(s): Nocek, B., Evdokimova, E., Kagan, O., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-04-25
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary
