Download MendeleyCrystal structure of putative TetR-family transcriptional regulator from Rhodococcus sp.
Chruszcz, M., Evdokimova, E., Cymborowski, M., Kagan, O., Wang, S., Koclega, K.D., Savchenko, A., Edwards, A., Minor, W.To be published.
2G3B | pdb_00002g3b
Crystal structure of putative TetR-family transcriptional regulator from Rhodococcus sp.
- PDB DOI: https://doi.org/10.2210/pdb2G3B/pdb
- Classification: TRANSCRIPTION
- Organism(s): Rhodococcus jostii RHA1
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2006-02-17 Released: 2006-03-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.240 (Depositor), 0.250 (DCC)
- R-Value Work: 0.185 (Depositor), 0.210 (DCC)
- R-Value Observed: 0.188 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| putative TetR-family transcriptional regulator | 208 | Rhodococcus jostii RHA1 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q0S8G3 (Rhodococcus jostii (strain RHA1)) Explore Q0S8G3 Go to UniProtKB: Q0S8G3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q0S8G3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C [auth A], D [auth A], E [auth A], F [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.240 (Depositor), 0.250 (DCC)
- R-Value Work: 0.185 (Depositor), 0.210 (DCC)
- R-Value Observed: 0.188 (Depositor)
Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 53.89 | α = 90 |
| b = 75.32 | β = 90 |
| c = 100.248 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| HKL-3000 | phasing |
| SHELXD | phasing |
| SHELXE | model building |
| MLPHARE | phasing |
| DM | phasing |
| SOLVE | phasing |
| RESOLVE | phasing |
| Coot | model building |
| CCP4 | phasing |
| O | model building |
Entry History
Deposition Data
- Released Date: 2006-03-14 Deposition Author(s): Chruszcz, M., Evdokimova, E., Cymborowski, M., Kagan, O., Wang, S., Koclega, K.D., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-03-14
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2022-04-13
Changes: Database references, Derived calculations, Structure summary - Version 1.4: 2024-10-09
Changes: Data collection, Refinement description, Structure summary
