Download MendeleyBiochemical and Structural Basis for Octaprenyl Pyrophosphate Synthase
Guo, R.T., Kuo, C.J., Cheng, Y.S., Cheng, Y.L., Liang, P.H., Wang, A.H.-J.To be published.
1WL2 | pdb_00001wl2
Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima R90A mutant
- PDB DOI: https://doi.org/10.2210/pdb1WL2/pdb
- Classification: TRANSFERASE
- Organism(s): Thermotoga maritima MSB8
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2004-06-18 Released: 2005-06-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.266 (Depositor), 0.280 (DCC)
- R-Value Work: 0.233 (Depositor), 0.240 (DCC)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| octoprenyl-diphosphate synthase | 299 | Thermotoga maritima MSB8 | Mutation(s): 1 EC: 2.5.1.11 |  | |
UniProt | |||||
Find proteins for Q9X1M1 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9X1M1 Go to UniProtKB: Q9X1M1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9X1M1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A], C [auth A], D [auth A], E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.266 (Depositor), 0.280 (DCC)
- R-Value Work: 0.233 (Depositor), 0.240 (DCC)
Space Group: I 4 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 150.861 | α = 90 |
| b = 150.861 | β = 90 |
| c = 64.823 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| CNS | refinement |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2005-06-28 Deposition Author(s): Guo, R.T., Kuo, C.J., Cheng, Y.S., Cheng, Y.L., Liang, P.H., Wang, A.H.-J.
Revision History (Full details and data files)
- Version 1.0: 2005-06-28
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance - Version 1.3: 2021-11-10
Changes: Database references, Derived calculations - Version 1.4: 2023-10-25
Changes: Data collection, Refinement description
