Download MendeleyCrystal structure of Uncharacterized conserved protein YjbQ/UPF0047 family, ortholog yugU B.subtilis (15023806) from Clostridium acetobutylicum at 1.31 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
1VMH | pdb_00001vmh
Crystal structure of an uncharacterized conserved protein yjbq/upf0047 family, ortholog yugu b.subtilis (ca_c0907) from clostridium acetobutylicum at 1.31 A resolution
- PDB DOI: https://doi.org/10.2210/pdb1VMH/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Clostridium acetobutylicum
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-09-24 Released: 2004-10-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.31 Å
- R-Value Free: 0.185 (Depositor), 0.190 (DCC)
- R-Value Work: 0.157 (Depositor), 0.170 (DCC)
- R-Value Observed: 0.159 (Depositor)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized conserved protein YjbQ/UPF0047 family, ortholog yugU B.subtilis | 144 | Clostridium acetobutylicum | Mutation(s): 0 Gene Names: CAC0907 |  | |
UniProt | |||||
Find proteins for Q97KL0 (Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)) Explore Q97KL0 Go to UniProtKB: Q97KL0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q97KL0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NA Query on NA | B [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.31 Å
- R-Value Free: 0.185 (Depositor), 0.190 (DCC)
- R-Value Work: 0.157 (Depositor), 0.170 (DCC)
- R-Value Observed: 0.159 (Depositor)
Diffraction Data: https://doi.org/10.18430/M31VMH
Space Group: H 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 79.406 | α = 90 |
| b = 79.406 | β = 90 |
| c = 50.688 | γ = 120 |
| Software Name | Purpose |
|---|---|
| XDS | data scaling |
| SCALA | data scaling |
| MOLREP | phasing |
| REFMAC | refinement |
| XDS | data reduction |
| CCP4 | data scaling |
Entry History
Deposition Data
- Released Date: 2004-10-05 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2004-10-05
Type: Initial release - Version 1.1: 2008-04-26
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Derived calculations, Version format compliance - Version 1.3: 2023-08-23
Changes: Data collection, Database references, Derived calculations, Refinement description
