Download MendeleyCrystal structure of sugar-phosphate aldolase from Thermotoga maritima.
Osipiuk, J., Cuff, M.E., Korolev, O., Skarina, T., Savchenko, A., Edwards, A., Joachimiak, A.To be published.
1PVT | pdb_00001pvt
Crystal structure of sugar-phosphate aldolase from Thermotoga maritima
- PDB DOI: https://doi.org/10.2210/pdb1PVT/pdb
- Classification: LYASE
- Organism(s): Thermotoga maritima
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2003-06-28 Released: 2003-09-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.296 (Depositor), 0.248 (DCC)
- R-Value Work: 0.257 (Depositor), 0.243 (DCC)
- R-Value Observed: 0.257 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| sugar-phosphate aldolase | 238 | Thermotoga maritima | Mutation(s): 8 Gene Names: TM1072 |  | |
UniProt | |||||
Find proteins for Q9X0G1 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9X0G1 Go to UniProtKB: Q9X0G1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9X0G1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.296 (Depositor), 0.248 (DCC)
- R-Value Work: 0.257 (Depositor), 0.243 (DCC)
- R-Value Observed: 0.257 (Depositor)
Space Group: P 4 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 108.51 | α = 90 |
| b = 108.51 | β = 90 |
| c = 53.996 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| SOLVE | phasing |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2003-09-23 Deposition Author(s): Osipiuk, J., Cuff, M.E., Korolev, O., Skarina, T., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2003-09-23
Type: Initial release - Version 1.1: 2008-04-29
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary
