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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Rubrobacter xylanophilus"

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Search Summary

This query matches 77 Structures.

Refinements

Structure Determination Methodology

experimental (77)

Scientific Name of Source Organism

	Homo sapiens (65)
	Mus musculus (16)
	synthetic construct (10)
	Caulobacter vibrioides CB15 (2)
	Gallus gallus (2)
	Arabidopsis thaliana (1)
	Campylobacter lari (1)
	Caulobacter vibrioides (1)
	Drosophila melanogaster (1)
	Enterococcus faecalis (1)

More...

Taxonomy

	Eukaryota (72)
	other sequences (10)
	Bacteria (5)

Experimental Method

	X-RAY DIFFRACTION (75)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (77)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (25)
	2.0 - 2.5 (31)
	2.5 - 3.0 (12)
	3.0 - 3.5 (4)

Release Date

	1995 - 1999 (15)
	2005 - 2009 (5)
	2010 - 2014 (47)
	2015 - 2019 (10)

Enzyme Classification Name

	Transferases (77)
	Hydrolases (3)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (70)
	Cyclic (17)

SCOP Classification

	Alpha and beta proteins (a+b) (23)
	All beta proteins (4)
	Artifacts (5)
	Alpha and beta proteins (a/b) (2)
	All alpha proteins (1)

AllSelected

1 to 25 of 77 Structures

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1BX9 \| pdb_00001bx9	Download File View File

GLUTATHIONE S-TRANSFERASE IN COMPLEX WITH HERBICIDE

Prade, L., Huber, R., Bieseler, B.

(1998) Structure 6: 1445-1452

Released	1998-10-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Arabidopsis thaliana
Macromolecule	FOE-4053-glutathione conjugate GGL-FOE-GLY (protein) GLUTATHIONE S-TRANSFERASE (protein)

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1CWE \| pdb_00001cwe	Download File View File

HUMAN P56LCK TYROSINE KINASE COMPLEXED WITH PHOSPHOPEPTIDE

Mikol, V.

(1995) J Mol Biology 246: 344-355

Released	1996-12-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	P56LCK TYROSINE KINASE (protein) PHOSPHOPEPTIDE ACQ-PMP-GLU-GLU-ILE-PRO (protein)

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2BKK \| pdb_00002bkk	Download File View File

Crystal structure of Aminoglycoside Phosphotransferase APH(3')-IIIa in complex with the inhibitor AR_3a

Kohl, A., Amstutz, P., Parizek, P., Binz, H.K., Briand, C., Capitani, G., Forrer, P., Pluckthun, A., Grutter, M.G.

(2005) Structure 13: 1131

Released	2005-08-09
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Enterococcus faecalis synthetic construct
Macromolecule	AMINOGLYCOSIDE 3'-PHOSPHOTRANSFERASE (protein) DESIGNED ANKYRIN REPEAT INHIBITOR AR_3A (protein)
Unique Ligands	ADP, MG

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2BZK \| pdb_00002bzk	Download File View File

CRYSTAL STRUCTURE OF THE HUMAN PIM1 IN COMPLEX WITH AMPPNP AND PIMTIDE

Debreczeni, J.E., Bullock, A., Knapp, S., von Delft, F., Sundstrom, M., Arrowsmith, C., Weigelt, J., Edwards, A.

To be published

Released	2005-11-03
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens
Macromolecule	PIMTIDE (protein) PROTO-ONCOGENE SERINE THREONINE PROTEIN KINASE PIM1 (protein)
Unique Ligands	ANP

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2C3I \| pdb_00002c3i	Download File View File

CRYSTAL STRUCTURE OF HUMAN PIM1 IN COMPLEX WITH IMIDAZOPYRIDAZIN I

Philippakopoulos, P., Knapp, S., Debreczeni, J., Bullock, A., von Delft, F., Sundstrom, M., Arrowsmith, C., Edwards, A., Guo, K., Weigelt, J.

(2007) Cancer Res 67: 6916

Released	2005-11-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	PIMTIDE (protein) PROTO-ONCOGENE SERINE THREONINE PROTEIN KINASE PIM1 (protein)
Unique Ligands	IYZ

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2WO6 \| pdb_00002wo6	Download File View File

Human Dual-Specificity Tyrosine-Phosphorylation-Regulated Kinase 1A in complex with a consensus substrate peptide

Roos, A.K., Soundararajan, M., Elkins, J.M., Fedorov, O., Eswaran, J., Phillips, C., Pike, A.C.W., Ugochukwu, E., Muniz, J.R.C., Burgess-Brown, N., von Delft, F., Arrowsmith, C.H., Wikstrom, M., Edwards, A., Bountra, C., Knapp, S.

(2013) Structure 21: 986

Released	2009-08-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ARTIFICIAL CONSENSUS SEQUENCE (protein) DUAL SPECIFICITY TYROSINE-PHOSPHORYLATION- REGULATED KINASE 1A (protein)
Unique Ligands	CL, D15

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3RCE \| pdb_00003rce	Download File View File

Bacterial oligosaccharyltransferase PglB

Lizak, C., Gerber, S., Numao, S., Aebi, M., Locher, K.P.

(2011) Nature 474: 350-355

Released	2011-06-15
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Campylobacter lari
Macromolecule	Oligosaccharide transferase to N-glycosylate proteins (protein) Substrate Mimic Peptide (protein)
Unique Ligands	MG

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3X2U \| pdb_00003x2u	Download File View File

Michaelis-like initial complex of cAMP-dependent Protein Kinase Catalytic Subunit.

Das, A., Langan, P., Gerlits, O., Kovalevsky, A.Y., Heller, W.T.

(2015) Structure 23: 2331-2340

Released	2015-12-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus synthetic construct
Macromolecule	Substrate Peptide (protein) cAMP-dependent protein kinase catalytic subunit alpha (protein)
Unique Ligands	ATP, MG

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3X2V \| pdb_00003x2v	Download File View File

Michaelis-like complex of cAMP-dependent Protein Kinase Catalytic Subunit

Das, A., Langan, P., Gerlits, O., Kovalevsky, A.Y., Heller, W.T.

(2015) Structure 23: 2331-2340

Released	2015-12-16
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Mus musculus synthetic construct
Macromolecule	Substrate Peptide (protein) cAMP-dependent protein kinase catalytic subunit alpha (protein)
Unique Ligands	ATP, CO3, MG

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3X2W \| pdb_00003x2w	Download File View File

Michaelis complex of cAMP-dependent Protein Kinase Catalytic Subunit

Das, A., Langan, P., Gerlits, O., Kovalevsky, A.Y., Heller, W.T.

(2015) Structure 23: 2331-2340

Released	2015-12-16
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mus musculus synthetic construct
Macromolecule	Substrate Peptide (protein) cAMP-dependent protein kinase catalytic subunit alpha (protein)
Unique Ligands	ATP, CO3, MG

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3ZDI \| pdb_00003zdi	Download File View File

Glycogen Synthase Kinase 3 Beta complexed with Axin Peptide and Inhibitor 7d

Oberholzer, A.E., Pearl, L.H.

(2013) J Med Chem 56: 264

Released	2012-12-26
Method	X-RAY DIFFRACTION 2.645 Å
Organisms	Homo sapiens
Macromolecule	AXIN-1 (protein) GLYCOGEN SYNTHASE KINASE-3 BETA (protein)
Unique Ligands	PO4, UGJ

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3ZRK \| pdb_00003zrk	Download File View File

Identification of 2-(4-pyridyl)thienopyridinones as GSK-3beta inhibitors

Gentile, G., Bernasconi, G., Pozzan, A., Merlo, G., Marzorati, P., Bamborough, P., Bax, B., Bridges, A., Brough, C., Carter, P., Cutler, G., Neu, M., Takada, M.

(2011) Bioorg Med Chem Lett 21: 4823

Released	2011-06-29
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Homo sapiens
Macromolecule	GLYCOGEN SYNTHASE KINASE-3 BETA (protein) PROTO-ONCOGENE FRAT1 (protein)
Unique Ligands	GOL, SO4, ZRK

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3ZRL \| pdb_00003zrl	Download File View File

Identification of 2-(4-pyridyl)thienopyridinones as GSK-3beta inhibitors

Gentile, G., Bernasconi, G., Pozzan, A., Merlo, G., Marzorati, P., Bamborough, P., Bax, B., Bridges, A., Brough, C., Carter, P., Cutler, G., Neu, M., Takada, M.

(2011) Bioorg Med Chem Lett 21: 4823

Released	2011-06-29
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Homo sapiens
Macromolecule	GLYCOGEN SYNTHASE KINASE-3 BETA (protein) PROTO-ONCOGENE FRAT1 (protein)
Unique Ligands	GOL, SO4, ZRL

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3ZRM \| pdb_00003zrm	Download File View File

Identification of 2-(4-pyridyl)thienopyridinones as GSK-3beta inhibitors

Gentile, G., Bernasconi, G., Pozzan, A., Merlo, G., Marzorati, P., Bamborough, P., Bax, B., Bridges, A., Brough, C., Carter, P., Cutler, G., Neu, M., Takada, M.

(2011) Bioorg Med Chem Lett 21: 4823

Released	2011-06-29
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Homo sapiens
Macromolecule	GLYCOGEN SYNTHASE KINASE-3 BETA (protein) PROTO-ONCOGENE FRAT1 (protein)
Unique Ligands	GOL, SO4, ZRM

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4AFJ \| pdb_00004afj	Download File View File

5-aryl-4-carboxamide-1,3-oxazoles: potent and selective GSK-3 inhibitors

Gentile, G., Merlo, G., Pozzan, A., Bernasconi, G., Bax, B., Bamborough, P., Bridges, A., Carter, P., Neu, M., Yao, G., Brough, C., Cutler, G., Coffin, A., Belyanskaya, S.

(2012) Bioorg Med Chem Lett 22: 1989

Released	2012-02-29
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Homo sapiens
Macromolecule	GLYCOGEN SYNTHASE KINASE-3 BETA (protein) PROTO-ONCOGENE FRAT1 (protein)
Unique Ligands	GOL, SJJ, SO4

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4AID \| pdb_00004aid	Download File View File

Crystal structure of C. crescentus PNPase bound to RNase E recognition peptide

Hardwick, S.W., Gubbey, T., Hug, I., Jenal, U., Luisi, B.F.

(2012) Open Biol 2: 20028

Released	2012-04-18
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Caulobacter vibrioides CB15
Macromolecule	POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (protein) RIBONUCLEASE, RNE/RNG FAMILY PROTEIN (protein)
Unique Ligands	PO4

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4AIM \| pdb_00004aim	Download File View File

Crystal structure of C. crescentus PNPase bound to RNase E recognition peptide

Hardwick, S.W., Gubbey, T., Hug, I., Jenal, U., Luisi, B.F.

(2012) Open Biol 2: 20028

Released	2012-04-18
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Caulobacter vibrioides Caulobacter vibrioides CB15
Macromolecule	POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (protein) RIBONUCLEASE, RNE/RNG FAMILY PROTEIN (protein)
Unique Ligands	PO4

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4AY5 \| pdb_00004ay5	Download File View File

Human O-GlcNAc transferase (OGT) in complex with UDP and glycopeptide

Schimpl, M., Zheng, X., Blair, D.E., Schuettelkopf, A.W., Navratilova, I., Aristotelous, T., Ferenbach, A.T., Macnaughtan, M.A., Borodkin, V.S., van Aalten, D.M.F.

(2012) Nat Chem Biol 8: 969

Released	2012-10-24
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	GTAB1TIDE (protein) UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYL TRANSFERASE 110 KDA SUBUNIT (protein)
Unique Ligands	NAG, UDP

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4B7T \| pdb_00004b7t	Download File View File

Glycogen Synthase Kinase 3 Beta complexed with Axin Peptide and Leucettine L4

Oberholzer, A.E., Pearl, L.H.

(2012) J Med Chem 55: 9312

Released	2013-01-30
Method	X-RAY DIFFRACTION 2.772 Å
Organisms	Homo sapiens
Macromolecule	AXIN-1 (protein) GLYCOGEN SYNTHASE KINASE-3 BETA (protein)
Unique Ligands	CWT

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4C1Q \| pdb_00004c1q	Download File View File

Crystal structure of the PRDM9 SET domain in complex with H3K4me2 and AdoHcy.

Mathioudakis, N., Cusack, S., Kadlec, J.

(2013) Cell Rep 5: 13

Released	2013-10-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	HISTONE H3.1 (protein) HISTONE-LYSINE N-METHYLTRANSFERASE PRDM9 (protein)
Unique Ligands	GOL, SAH, ZN

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4D0Z \| pdb_00004d0z	Download File View File

GalNAc-T2 crystal soaked with UDP-5SGalNAc, mEA2 and manganese (Higher resolution dataset)

Lira-Navarrete, E., Iglesias-Fernandez, J., Zandberg, W.F., Companon, I., Kong, Y., Corzana, F., Pinto, B.M., Clausen, H., Peregrina, J.M., Vocadlo, D., Rovira, C., Hurtado-Guerrero, R.

(2014) Angew Chem Int Ed Engl 53: 8206

Released	2014-05-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	PEPTIDE (protein) POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 2 (protein)
Unique Ligands	BBK, EDO, HWU, MN

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4D11 \| pdb_00004d11	Download File View File

GalNAc-T2 crystal soaked with UDP-5SGalNAc, mEA2 peptide and manganese (Lower resolution dataset)

Lira-Navarrete, E., Iglesias-Fernandez, J., Zandberg, W.F., Companon, I., Kong, Y., Corzana, F., Pinto, B.M., Clausen, H., Peregrina, J.M., Vocadlo, D., Rovira, C., Hurtado-Guerrero, R.

(2014) Angew Chem Int Ed Engl 53: 8206

Released	2014-05-28
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	PEPTIDE (protein) POLYPEPTIDE GALNAC-TRANSFERASE T2 (protein)
Unique Ligands	BBK, MN, UDP

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4FIF \| pdb_00004fif	Download File View File

Catalytic domain of human PAK4 with RPKPLVDP peptide

Ha, B.H., Boggon, T.J.

(2012) Proc Natl Acad Sci U S A 109: 16107-16112

Released	2012-09-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase PAK 4 (protein)
Unique Ligands	ANP

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4FII \| pdb_00004fii	Download File View File

Catalytic domain of human PAK4 with RPKPLVDP peptide

Ha, B.H., Boggon, T.J.

(2012) Proc Natl Acad Sci U S A 109: 16107-16112

Released	2012-09-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase PAK 4 (protein)

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4GYW \| pdb_00004gyw	Download File View File

Crystal structure of human O-GlcNAc Transferase in complex with UDP and a glycopeptide

Lazarus, M.B., Jiang, J., Gloster, T.M., Zandberg, W.F., Vocadlo, D.J., Walker, S.

(2012) Nat Chem Biol 8: 966-968

Released	2012-10-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Casein kinase II subunit alpha (protein) UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (protein)
Unique Ligands	NAG, SO4, UDP

1 to 25 of 77 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1BX9 | pdb_00001bx9

1CWE | pdb_00001cwe

2BKK | pdb_00002bkk

2BZK | pdb_00002bzk

2C3I | pdb_00002c3i

2WO6 | pdb_00002wo6

3RCE | pdb_00003rce

3X2U | pdb_00003x2u

3X2V | pdb_00003x2v

3X2W | pdb_00003x2w

3ZDI | pdb_00003zdi

3ZRK | pdb_00003zrk

3ZRL | pdb_00003zrl

3ZRM | pdb_00003zrm

4AFJ | pdb_00004afj

4AID | pdb_00004aid

4AIM | pdb_00004aim

4AY5 | pdb_00004ay5

4B7T | pdb_00004b7t

4C1Q | pdb_00004c1q

4D0Z | pdb_00004d0z

4D11 | pdb_00004d11

4FIF | pdb_00004fif

4FII | pdb_00004fii

4GYW | pdb_00004gyw