RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Source Organism Taxonomy Name (Full Lineage) = "Methylophilus methylotrophus"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Methylophilus methylotrophus (11)
	Methylophilus methylotrophus W3A1 (9)

Taxonomy

Bacteria (20)

Experimental Method

	X-RAY DIFFRACTION (19)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (20)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (9)
	2.0 - 2.5 (6)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (3)
	2000 - 2004 (8)
	2005 - 2009 (7)
	2015 - 2019 (1)

Enzyme Classification Name

	Oxidoreductases (10)
	Transferases (1)

Symmetry Type

	Asymmetric (10)
	Cyclic (10)

SCOP Classification

	Alpha and beta proteins (a/b) (11)
	All alpha proteins (8)
	All beta proteins (5)

AllSelected

1 to 20 of 20 Structures

Page 1 of 1

Sort by

Explore in 3D

1DJN \| pdb_00001djn	Download File View File

STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF RECOMBINANT WILD TYPE TRIMETHYLAMINE DEHYDROGENASE FROM METHYLOPHILUS METHYLOTROPHUS (SP. W3A1)

Trickey, P., Basran, J., Lian, L.-Y., Chen, Z.-W., Barton, J.D., Sutcliffe, M.J., Scrutton, N.S., Mathews, F.S.

(2000) Biochemistry 39: 7678-7688

Released	1999-12-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methylophilus methylotrophus W3A1
Macromolecule	TRIMETHYLAMINE DEHYDROGENASE (protein)
Unique Ligands	ADP, FMN, SF4

Explore in 3D

1DJQ \| pdb_00001djq	Download File View File

STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF RECOMBINANT C30A MUTANT OF TRIMETHYLAMINE DEHYDROGENASE FROM METHYLOPHILUS METHYLOTROPHUS (SP. W3A1)

Trickey, P., Basran, J., Lian, L.-Y., Chen, Z.-W., Barton, J.D., Sutcliffe, M.J., Scrutton, N.S., Mathews, F.S.

(2000) Biochemistry 39: 7678-7688

Released	1999-12-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methylophilus methylotrophus W3A1
Macromolecule	TRIMETHYLAMINE DEHYDROGENASE (protein)
Unique Ligands	ADP, FMN, SF4

Explore in 3D

1E8E \| pdb_00001e8e	Download File View File

Solution Structure of Methylophilus methylotrophus Cytochrome c''. Insights into the Structural Basis of Haem-Ligand Detachment

Brennan, L., Turner, D.L., Fareleira, P., Santos, H.

(2001) J Mol Biology 308: 353

Released	2001-09-20
Method	SOLUTION NMR
Organisms	Methylophilus methylotrophus
Macromolecule	CYTOCHROME C'' (protein)
Unique Ligands	HEC

Explore in 3D

1G72 \| pdb_00001g72	Download File View File

CATALYTIC MECHANISM OF QUINOPROTEIN METHANOL DEHYDROGENASE: A THEORETICAL AND X-RAY CRYSTALLOGRAPHIC INVESTIGATION

Zheng, Y., Xia, Z., Chen, Z., Bruice, T.C., Mathews, F.S.

(2001) Proc Natl Acad Sci U S A 98: 432-434

Released	2001-01-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methylophilus methylotrophus W3A1
Macromolecule	METHANOL DEHYDROGENASE HEAVY SUBUNIT (protein) METHANOL DEHYDROGENASE LIGHT SUBUNIT (protein)
Unique Ligands	CA, PQQ

Explore in 3D

1GU2 \| pdb_00001gu2	Download File View File

Crystal structure of oxidized cytochrome c'' from Methylophilus methylotrophus

Enguita, F.J., Pohl, E., Rodrigues, A., Santos, H., Carrondo, M.A.

(2006) J Biol Inorg Chem 11: 189

Released	2003-01-16
Method	X-RAY DIFFRACTION 1.19 Å
Organisms	Methylophilus methylotrophus W3A1
Macromolecule	CYTOCHROME C'' (protein)
Unique Ligands	HEC

Explore in 3D

1O94 \| pdb_00001o94	Download File View File

Ternary complex between trimethylamine dehydrogenase and electron transferring flavoprotein

Leys, D., Basran, J., Talfournier, F., Sutcliffe, M.J., Scrutton, N.S.

(2003) Nat Struct Biol 10: 219

Released	2003-02-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methylophilus methylotrophus
Macromolecule	ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT (protein) ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT (protein) TRIMETHYLAMINE DEHYDROGENASE (protein)
Unique Ligands	ADP, AMP, FMN, SF4

Explore in 3D

1O95 \| pdb_00001o95	Download File View File

Ternary complex between trimethylamine dehydrogenase and electron transferring flavoprotein

Leys, D., Basran, J., Talfournier, F., Sutcliffe, M.J., Scrutton, N.S.

(2003) Nat Struct Biol 10: 219

Released	2003-02-06
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Methylophilus methylotrophus
Macromolecule	ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT (protein) ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT (protein) TRIMETHYLAMINE DEHYDROGENASE (protein)
Unique Ligands	ADP, AMP, FMN, SF4

Explore in 3D

1O96 \| pdb_00001o96	Download File View File

Structure of electron transferring flavoprotein for Methylophilus methylotrophus.

Leys, D., Basran, J., Talfournier, F., Sutcliffe, M.J., Scrutton, N.S.

(2003) Nat Struct Biol 10: 219

Released	2003-02-06
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Methylophilus methylotrophus
Macromolecule	ELECTRON TRANSFERRING FLAVOPROTEIN ALPHA-SUBUNIT (protein) ELECTRON TRANSFERRING FLAVOPROTEIN BETA-SUBUNIT (protein)
Unique Ligands	AMP, FAD

Explore in 3D

1O97 \| pdb_00001o97	Download File View File

Structure of electron transferring flavoprotein from Methylophilus methylotrophus, recognition loop removed by limited proteolysis

Leys, D., Basran, J., Talfournier, F., Sutcliffe, M.J., Scrutton, N.S.

(2003) Nat Struct Biol 10: 219

Released	2003-02-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methylophilus methylotrophus
Macromolecule	ELECTRON TRANSFERRING FLAVOPROTEIN ALPHA-SUBUNIT (protein) ELECTRON TRANSFERRING FLAVOPROTEIN BETA-SUBUNIT (protein)
Unique Ligands	AMP, FAD

Explore in 3D

1OAE \| pdb_00001oae	Download File View File

Crystal structure of the reduced form of cytochrome c" from Methylophilus methylotrophus

Enguita, F.J., Grenha, R., Santos, H., Carrondo, M.A.

(2006) J Biol Inorg Chem 11: 189

Released	2004-03-26
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Methylophilus methylotrophus
Macromolecule	CYTOCHROME C" (protein)
Unique Ligands	GOL, HEC, SO4

Explore in 3D

2AD6 \| pdb_00002ad6	Download File View File

crystal structure of methanol dehydrogenase from M. W3A1 (form C)

Li, J., Gan, J.-H., Xia, Z.-X., Mathews, F.S.

(2011) Biochem Biophys Res Commun 406: 621-626

Released	2006-07-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methylophilus methylotrophus W3A1
Macromolecule	Methanol dehydrogenase subunit 1 (protein) Methanol dehydrogenase subunit 2 (protein)
Unique Ligands	CA, PQQ

Explore in 3D

2AD7 \| pdb_00002ad7	Download File View File

crystal structure of methanol dehydrogenase from M. W3A1 (form C) in the presence of methanol

Li, J., Gan, J.-H., Xia, Z.-X., Mathews, F.S.

(2011) Biochem Biophys Res Commun 406: 621-626

Released	2006-07-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methylophilus methylotrophus W3A1
Macromolecule	Methanol dehydrogenase subunit 1 (protein) Methanol dehydrogenase subunit 2 (protein)
Unique Ligands	CA, PQQ

Explore in 3D

2AD8 \| pdb_00002ad8	Download File View File

crystal structure of methanol dehydrogenase from M. W3A1 (form C) in the presence of ethanol

Li, J., Gan, J.-H., Xia, Z.-X., Mathews, F.S.

(2011) Biochem Biophys Res Commun 406: 621-626

Released	2006-07-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methylophilus methylotrophus W3A1
Macromolecule	Methanol dehydrogenase subunit 1 (protein) Methanol dehydrogenase subunit 2 (protein)
Unique Ligands	CA, PQQ

Explore in 3D

2TMD \| pdb_00002tmd	Download File View File

CORRELATION OF X-RAY DEDUCED AND EXPERIMENTAL AMINO ACID SEQUENCES OF TRIMETHYLAMINE DEHYDROGENASE

Mathews, F.S., Lim, L.W., White, S.

(1992) J Biological Chem 267: 6611-6619

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Methylophilus methylotrophus W3A1
Macromolecule	TRIMETHYLAMINE DEHYDROGENASE (protein)
Unique Ligands	ADP, FMN, SF4

Explore in 3D

3CLR \| pdb_00003clr	Download File View File

Crystal structure of the R236A ETF mutant from M. methylotrophus

Katona, G., Leys, D.

(2008) Biochemistry 47: 5168-5181

Released	2008-04-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methylophilus methylotrophus
Macromolecule	Electron transfer flavoprotein subunit alpha (protein) Electron transfer flavoprotein subunit beta (protein)
Unique Ligands	AMP, FAD, PO4

Explore in 3D

3CLS \| pdb_00003cls	Download File View File

Crystal structure of the R236C mutant of ETF from Methylophilus methylotrophus

Katona, G., Leys, D.

(2008) Biochemistry 47: 5168-5181

Released	2008-04-08
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Methylophilus methylotrophus
Macromolecule	Electron transfer flavoprotein subunit alpha (protein) Electron transfer flavoprotein subunit beta (protein)
Unique Ligands	AMP, FAD

Explore in 3D

3CLT \| pdb_00003clt	Download File View File

Crystal structure of the R236E mutant of Methylophilus methylotrophus ETF

Katona, G., Leys, D.

(2008) Biochemistry 47: 5168-5181

Released	2008-04-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methylophilus methylotrophus
Macromolecule	Electron transfer flavoprotein subunit alpha (protein) Electron transfer flavoprotein subunit beta (protein)
Unique Ligands	AMP, FAD

Explore in 3D

3CLU \| pdb_00003clu	Download File View File

Crystal structure of the R236K mutant from Methylophilus methylotrophus ETF

Katona, G., Leys, D.

(2008) Biochemistry 47: 5168-5181

Released	2008-04-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methylophilus methylotrophus
Macromolecule	Electron transfer flavoprotein subunit alpha (protein) Electron transfer flavoprotein subunit beta (protein)
Unique Ligands	AMP, FAD

Explore in 3D

4AAH \| pdb_00004aah	Download File View File

METHANOL DEHYDROGENASE FROM METHYLOPHILUS W3A1

Mathews, F.S., Xia, Z.-X.

(1996) J Mol Biology 259: 480-501

Released	1996-12-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Methylophilus methylotrophus W3A1
Macromolecule	METHANOL DEHYDROGENASE (protein)
Unique Ligands	CA, PQQ

Explore in 3D

5HR4 \| pdb_00005hr4	Download File View File

Structure of Type IIL restriction-modification enzyme MmeI in complex with DNA has implications for engineering of new specificities

Callahan, S.J., Luyten, Y.A., Gupta, Y.K., Wilson, G.G., Roberts, R.J., Morgan, R.D., Aggarwal, A.K.

(2016) PLoS Biol 14: e1002442-e1002442

Released	2016-04-27
Method	X-RAY DIFFRACTION 2.5964 Å
Organisms	Methylophilus methylotrophus
Macromolecule	MmeI (protein) DNA (5'-D(PGPTPTPAPTPGPTPCPGPGPAPTPA)-3') (nucleic acid) DNA (5'-D(PTPAPTPCPCPGPAPCPAPTPAPAPC)-3') (nucleic acid)
Unique Ligands	CA, SFG

1 to 20 of 20 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1DJN | pdb_00001djn

STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF RECOMBINANT WILD TYPE TRIMETHYLAMINE DEHYDROGENASE FROM METHYLOPHILUS METHYLOTROPHUS (SP. W3A1)

1DJQ | pdb_00001djq

STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF RECOMBINANT C30A MUTANT OF TRIMETHYLAMINE DEHYDROGENASE FROM METHYLOPHILUS METHYLOTROPHUS (SP. W3A1)

1E8E | pdb_00001e8e

Solution Structure of Methylophilus methylotrophus Cytochrome c''. Insights into the Structural Basis of Haem-Ligand Detachment

1G72 | pdb_00001g72

CATALYTIC MECHANISM OF QUINOPROTEIN METHANOL DEHYDROGENASE: A THEORETICAL AND X-RAY CRYSTALLOGRAPHIC INVESTIGATION

1GU2 | pdb_00001gu2

Crystal structure of oxidized cytochrome c'' from Methylophilus methylotrophus

1O94 | pdb_00001o94

Ternary complex between trimethylamine dehydrogenase and electron transferring flavoprotein

1O95 | pdb_00001o95

Ternary complex between trimethylamine dehydrogenase and electron transferring flavoprotein

1O96 | pdb_00001o96

Structure of electron transferring flavoprotein for Methylophilus methylotrophus.

1O97 | pdb_00001o97

Structure of electron transferring flavoprotein from Methylophilus methylotrophus, recognition loop removed by limited proteolysis

1OAE | pdb_00001oae

Crystal structure of the reduced form of cytochrome c" from Methylophilus methylotrophus

2AD6 | pdb_00002ad6

crystal structure of methanol dehydrogenase from M. W3A1 (form C)

2AD7 | pdb_00002ad7

crystal structure of methanol dehydrogenase from M. W3A1 (form C) in the presence of methanol

2AD8 | pdb_00002ad8

crystal structure of methanol dehydrogenase from M. W3A1 (form C) in the presence of ethanol

2TMD | pdb_00002tmd

CORRELATION OF X-RAY DEDUCED AND EXPERIMENTAL AMINO ACID SEQUENCES OF TRIMETHYLAMINE DEHYDROGENASE

3CLR | pdb_00003clr

Crystal structure of the R236A ETF mutant from M. methylotrophus

3CLS | pdb_00003cls

Crystal structure of the R236C mutant of ETF from Methylophilus methylotrophus

3CLT | pdb_00003clt

Crystal structure of the R236E mutant of Methylophilus methylotrophus ETF

3CLU | pdb_00003clu

Crystal structure of the R236K mutant from Methylophilus methylotrophus ETF

4AAH | pdb_00004aah

METHANOL DEHYDROGENASE FROM METHYLOPHILUS W3A1

5HR4 | pdb_00005hr4

Structure of Type IIL restriction-modification enzyme MmeI in complex with DNA has implications for engineering of new specificities

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1DJN | pdb_00001djn

1DJQ | pdb_00001djq

1E8E | pdb_00001e8e

1G72 | pdb_00001g72

1GU2 | pdb_00001gu2

1O94 | pdb_00001o94

1O95 | pdb_00001o95

1O96 | pdb_00001o96

1O97 | pdb_00001o97

1OAE | pdb_00001oae

2AD6 | pdb_00002ad6

2AD7 | pdb_00002ad7

2AD8 | pdb_00002ad8

2TMD | pdb_00002tmd

3CLR | pdb_00003clr

3CLS | pdb_00003cls

3CLT | pdb_00003clt

3CLU | pdb_00003clu

4AAH | pdb_00004aah

5HR4 | pdb_00005hr4