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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Deinococcus radiodurans"

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Search Summary

This query matches 430 Structures.

Refinements

Structure Determination Methodology

experimental (430)

Scientific Name of Source Organism

	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (220)
	Deinococcus radiodurans (214)
	synthetic construct (13)
	Escherichia coli K-12 (2)
	Mus musculus (2)
	Burkholderia thailandensis E264 (1)
	Deinococcus (1)
	Streptomyces actuosus (1)
	Streptomyces azureus (1)
	Streptomyces graminofaciens (1)

More...

Taxonomy

	Bacteria (430)
	other sequences (13)
	Eukaryota (2)

Experimental Method

	X-RAY DIFFRACTION (407)
	ELECTRON MICROSCOPY (18)
	SOLUTION NMR (5)

Polymer Entity Type

	Protein (421)
	RNA (53)
	DNA (21)

Refinement Resolution (Å)

	1.0 - 1.5 (32)
	1.5 - 2.0 (127)
	2.0 - 2.5 (123)
	2.5 - 3.0 (57)
	3.0 - 3.5 (42)
	3.5 - 4.0 (40)
	4.0 - 4.5 (2)
	> 4.5 (2)

Release Date

	2000 - 2004 (47)
	2005 - 2009 (105)
	2010 - 2014 (76)
	2015 - 2019 (103)
	2020 - 2024 (91)
	2025 - 2029 (8)

Enzyme Classification Name

	Hydrolases (81)
	Transferases (54)
	Isomerases (39)
	Oxidoreductases (20)
	Lyases (18)
	Ligases (7)

Membrane Protein Annotation

	OPM (19)
	PDBTM (16)
	MemProtMD (14)
	mpstruc (11)

Symmetry Type

	Cyclic (208)
	Asymmetric (201)
	Dihedral (31)
	Tetrahedral (7)
	Helical (1)
	Icosahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (51)
	Alpha and beta proteins (a/b) (48)
	Low resolution protein structures (12)
	All beta proteins (43)
	Artifacts (30)
	All alpha proteins (25)
	Small proteins (8)
	Multi-domain proteins (alpha and beta) (6)
	Peptides (6)

AllSelected

1 to 25 of 430 Structures

Page 1 of 18

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1INN \| pdb_00001inn	Download File View File

CRYSTAL STRUCTURE OF D. RADIODURANS LUXS, P21

Lewis, H.A., Furlong, E.B., Bergseid, M.G., Sanderson, W.E., Buchanan, S.G.

(2001) Structure 9: 527-537

Released	2001-06-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Deinococcus radiodurans
Macromolecule	AUTOINDUCER-2 PRODUCTION PROTEIN LUXS (protein)
Unique Ligands	MET, ZN

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1J5A \| pdb_00001j5a	Download File View File

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Schluenzen, F., Zarivach, R., Harms, J., Bashan, A., Tocilj, A., Albrecht, R., Yonath, A., Franceschi, F.

(2001) Nature 413: 814-821

Released	2002-03-08
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Deinococcus radiodurans
Macromolecule	RIBOSOMAL PROTEIN L22 (protein) RIBOSOMAL PROTEIN L32 (protein) RIBOSOMAL PROTEIN L4 (protein) 23S RRNA (nucleic acid)
Unique Ligands	CTY, MG

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1J6V \| pdb_00001j6v	Download File View File

CRYSTAL STRUCTURE OF D. RADIODURANS LUXS, C2

Lewis, H.A., Furlong, E.B., Bergseid, M.G., Sanderson, W.E., Buchanan, S.G.

(2001) Structure 9: 527-537

Released	2001-06-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Deinococcus radiodurans
Macromolecule	AUTOINDUCER-2 PRODUCTION PROTEIN LUXS (protein)
Unique Ligands	ZN

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1JZX \| pdb_00001jzx	Download File View File

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Schluenzen, F., Zarivach, R., Harms, J., Bashan, A., Tocilj, A., Albrecht, R., Yonath, A., Franceschi, F.

(2001) Nature 413: 814-821

Released	2001-10-26
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Deinococcus radiodurans
Macromolecule	Ribosomal Protein L22 (protein) Ribosomal Protein L32 (protein) Ribosomal Protein L4 (protein) 23S rRNA (nucleic acid)
Unique Ligands	CLY, MG

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1JZY \| pdb_00001jzy	Download File View File

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Schluenzen, F., Zarivach, R., Harms, J., Bashan, A., Tocilj, A., Albrecht, R., Yonath, A., Franceschi, F.

(2001) Nature 413: 814-821

Released	2001-10-26
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Deinococcus radiodurans
Macromolecule	Ribosomal Protein L22 (protein) Ribosomal Protein L32 (protein) Ribosomal Protein L4 (protein) 23S rRNA (nucleic acid)
Unique Ligands	ERY, MG

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1JZZ \| pdb_00001jzz	Download File View File

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Schluenzen, F., Zarivach, R., Harms, J., Bashan, A., Tocilj, A., Albrecht, R., Yonath, A., Franceschi, F.

(2001) Nature 413: 814-821

Released	2001-10-26
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Deinococcus radiodurans
Macromolecule	Ribosomal Protein L22 (protein) Ribosomal Protein L32 (protein) Ribosomal Protein L4 (protein) 23S rRNA (nucleic acid)
Unique Ligands	MG, ROX

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1K01 \| pdb_00001k01	Download File View File

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Schluenzen, F., Zarivach, R., Harms, J., Bashan, A., Tocilj, A., Albrecht, R., Yonath, A., Franceschi, F.

(2001) Nature 413: 814-821

Released	2001-10-26
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Deinococcus radiodurans
Macromolecule	Ribosomal Protein L22 (protein) Ribosomal Protein L32 (protein) Ribosomal Protein L4 (protein) 23S rRNA (nucleic acid)
Unique Ligands	CLM, MG

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1NJM \| pdb_00001njm	Download File View File

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Bashan, A., Agmon, I., Zarivatch, R., Schluenzen, F., Harms, J.M., Berisio, R., Bartels, H., Hansen, H.A., Yonath, A.

(2003) Mol Cell 11: 91-102

Released	2003-02-11
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Deinococcus radiodurans
Macromolecule	50S ribosomal protein L16 (protein) GENERAL STRESS PROTEIN CTC (protein) 23S ribosomal RNA (nucleic acid) tRNA acceptor stem mimic (nucleic acid)
Unique Ligands	SPS

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1NJN \| pdb_00001njn	Download File View File

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Bashan, A., Agmon, I., Zarivatch, R., Schluenzen, F., Harms, J.M., Berisio, R., Bartels, H., Hansen, H.A., Yonath, A.

(2003) Mol Cell 11: 91-102

Released	2003-02-11
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Deinococcus radiodurans
Macromolecule	23S ribosomal RNA (nucleic acid)
Unique Ligands	SPS

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1NJO \| pdb_00001njo	Download File View File

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Bashan, A., Agmon, I., Zarivatch, R., Schluenzen, F., Harms, J.M., Berisio, R., Bartels, H., Hansen, H.A., Yonath, A.

(2003) Mol Cell 11: 91-102

Released	2003-02-11
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Deinococcus radiodurans
Macromolecule	23S ribosomal RNA (nucleic acid) RNA ACC(Puromycin) (nucleic acid)

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1NJP \| pdb_00001njp	Download File View File

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Bashan, A., Agmon, I., Zarivatch, R., Schluenzen, F., Harms, J.M., Berisio, R., Bartels, H., Hansen, H.A., Yonath, A.

(2003) Mol Cell 11: 91-102

Released	2003-02-11
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Deinococcus radiodurans
Macromolecule	50S ribosomal protein L16 (protein) GENERAL STRESS PROTEIN CTC (protein) 23S ribosomal RNA (nucleic acid) tRNA acceptor stem mimic (nucleic acid)

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1NKW \| pdb_00001nkw	Download File View File

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Harms, J.M., Schluenzen, F., Zarivach, R., Bashan, A., Gat, S., Agmon, I., Bartels, H., Franceschi, F., Yonath, A.

(2001) Cell 107: 679-688

Released	2003-02-11
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Deinococcus radiodurans
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 2

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1NQY \| pdb_00001nqy	Download File View File

The structure of a CoA pyrophosphatase from D. Radiodurans

Kang, L.W., Gabelli, S.B., Bianchet, M.A., Xu, W.L., Bessman, M.J., Amzel, L.M.

(2003) J Bacteriol 185: 4110-4118

Released	2003-05-13
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Deinococcus radiodurans
Macromolecule	CoA pyrophosphatase (MutT/nudix family protein) (protein)

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1NQZ \| pdb_00001nqz	Download File View File

The structure of a CoA pyrophosphatase from D. Radiodurans complexed with a magnesium ion

Kang, L.W., Gabelli, S.B., Bianchet, M.A., Xu, W.L., Bessman, M.J., Amzel, L.M.

(2003) J Bacteriol 185: 4110-4118

Released	2003-05-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Deinococcus radiodurans
Macromolecule	CoA pyrophosphatase (MutT/nudix family protein) (protein)
Unique Ligands	MG

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1NWX \| pdb_00001nwx	Download File View File

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773

Schluenzen, F., Harms, J., Franceschi, F., Hansen, H.A.S., Bartels, H., Zarivach, R., Yonath, A.

(2003) Structure 11: 329-338

Released	2003-03-18
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Deinococcus radiodurans
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 2
Unique Ligands	773

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1NWY \| pdb_00001nwy	Download File View File

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Schluenzen, F., Harms, J., Franceschi, F., Hansen, H.A.S., Bartels, H., Zarivach, R., Yonath, A.

(2003) Structure 11: 329-338

Released	2003-03-18
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Deinococcus radiodurans
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 2
Unique Ligands	ZIT

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1OND \| pdb_00001ond	Download File View File

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Berisio, R., Schluenzen, F., Harms, J., Bashan, A., Auerbach, T., Baram, D., Yonath, A.

(2003) Nat Struct Biol 10: 366-370

Released	2003-04-15
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Deinococcus radiodurans
Macromolecule	50S ribosomal protein L22 (protein) 50S ribosomal protein L32 (protein) 23S RIBOSOMAL RNA (nucleic acid)
Unique Ligands	TAO

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1P9X \| pdb_00001p9x	Download File View File

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE ANTIBIOTIC

Berisio, R., Harms, J., Schluenzen, F., Zarivach, R., Hansen, H.A., Fucini, P., Yonath, A.

(2003) J Bacteriol 185: 4276-4279

Released	2003-08-05
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Deinococcus radiodurans
Macromolecule	23S RIBOSOMAL RNA (nucleic acid)
Unique Ligands	TEL

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1Q27 \| pdb_00001q27	Download File View File

NMR Solution Structure of DR0079: An hypothetical Nudix protein from D. radiodurans

Buchko, G.W., Ni, S., Holbrook, S.R., Kennedy, M.A.

(2004) Proteins 56: 28-39

Released	2003-08-12
Method	SOLUTION NMR
Organisms	Deinococcus radiodurans
Macromolecule	Putative Nudix hydrolase DR0079 (protein)

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1R0M \| pdb_00001r0m	Download File View File

Structure of Deinococcus radiodurans N-acylamino acid racemase at 1.3 : insights into a flexible binding pocket and evolution of enzymatic activity

Wang, W.-C., Chiu, W.-C., Hsu, S.-K., Wu, C.-L., Chen, C.-Y., Liu, J.-S., Hsu, W.-H.

(2004) J Mol Biology 342: 155-169

Released	2004-09-22
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Deinococcus radiodurans
Macromolecule	N-acylamino acid racemase (protein)

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1SE8 \| pdb_00001se8	Download File View File

Structure of single-stranded DNA-binding protein (SSB) from D. radiodurans

Bernstein, D.A., Eggington, J.M., Killoran, M.P., Misic, A.M., Cox, M.M., Keck, J.L.

(2004) Proc Natl Acad Sci U S A 101: 8575-8580

Released	2004-06-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Deinococcus radiodurans
Macromolecule	Single-strand binding protein (protein)

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1SFN \| pdb_00001sfn	Download File View File

Crystal structure of protein DR1152 from Deinococcus radiodurans R1, Pfam DUF861

Fedorov, A.A., Fedorov, E.V., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2004-06-22
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Deinococcus radiodurans
Macromolecule	conserved hypothetical protein (protein)

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1SGJ \| pdb_00001sgj	Download File View File

Crystal structure of citrate lyase beta subunit

Eswaramoorthy, S., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2004-08-17
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Deinococcus radiodurans
Macromolecule	citrate lyase, beta subunit (protein)
Unique Ligands	MG, OAA

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1SJY \| pdb_00001sjy	Download File View File

Crystal Structure of NUDIX HYDROLASE DR1025 FROM DEINOCOCCUS RADIODURANS

Ranatunga, W., Hill, E.E., Mooster, J.L., Holbrook, E.L., Schulze-Gahmen, U., Xu, W., Bessman, M.J., Brenner, S.E., Holbrook, S.R., Berkeley Structural Genomics Center (BSGC)

(2004) J Mol Biology 339: 103-116

Released	2004-05-11
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Deinococcus radiodurans
Macromolecule	MutT/nudix family protein (protein)

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1SM1 \| pdb_00001sm1	Download File View File

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Harms, J.M., Schluenzen, F., Fucini, P., Bartels, H., Yonath, A.

(2004) BMC Biol 2: 4

Released	2004-08-03
Method	X-RAY DIFFRACTION 3.42 Å
Organisms	Deinococcus radiodurans Streptomyces graminofaciens
Macromolecule	Unique protein chains: 30 Unique nucleic acid chains: 2
Unique Ligands	DOL

1 to 25 of 430 Structures

Page 1 of 18

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1INN | pdb_00001inn

1J5A | pdb_00001j5a

1J6V | pdb_00001j6v

1JZX | pdb_00001jzx

1JZY | pdb_00001jzy

1JZZ | pdb_00001jzz

1K01 | pdb_00001k01

1NJM | pdb_00001njm

1NJN | pdb_00001njn

1NJO | pdb_00001njo

1NJP | pdb_00001njp

1NKW | pdb_00001nkw

1NQY | pdb_00001nqy

1NQZ | pdb_00001nqz

1NWX | pdb_00001nwx

1NWY | pdb_00001nwy

1OND | pdb_00001ond

1P9X | pdb_00001p9x

1Q27 | pdb_00001q27

1R0M | pdb_00001r0m

1SE8 | pdb_00001se8

1SFN | pdb_00001sfn

1SGJ | pdb_00001sgj

1SJY | pdb_00001sjy

1SM1 | pdb_00001sm1