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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = W

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Search Summary

This query matches 45 Structures.

Refinements

Structure Determination Methodology

experimental (45)

Scientific Name of Source Organism

	Nitratidesulfovibrio vulgaris str. Hildenborough (19)
	Geobacter metallireducens GS-15 (5)
	Methylorubrum extorquens AM1 (4)
	Methanothermobacter wolfeii (3)
	Coreopsis grandiflora (2)
	Homo sapiens (2)
	Methanothermobacter sp. CaT2 (2)
	Rattus norvegicus (2)
	Azotobacter vinelandii (1)
	Candidatus Methanoperedenaceae archaeon GB50 (1)

More...

Taxonomy

	Bacteria (33)
	Eukaryota (7)
	Archaea (5)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (42)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

	Protein (45)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (17)
	2.0 - 2.5 (18)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)
	3.5 - 4.0 (3)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (4)
	2010 - 2014 (2)
	2015 - 2019 (13)
	2020 - 2024 (24)

Enzyme Classification Name

	Oxidoreductases (29)
	Transferases (3)
	Hydrolases (2)
	Lyases (1)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (31)
	Cyclic (12)
	Dihedral (3)

SCOP Classification

	Alpha and beta proteins (a+b) (4)
	Alpha and beta proteins (a/b) (4)
	All beta proteins (2)
	All alpha proteins (1)

AllSelected

1 to 25 of 45 Structures

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1H0H \| pdb_00001h0h	Download File View File

Tungsten containing Formate Dehydrogenase from Desulfovibrio Gigas

Raaijmakers, H.C.A.

(2002) Structure 10: 1261

Released	2003-02-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Megalodesulfovibrio gigas
Macromolecule	FORMATE DEHYDROGENASE SUBUNIT ALPHA (protein) FORMATE DEHYDROGENASE SUBUNIT BETA (protein)
Unique Ligands	2MD, CA, EPE, MGD, SF4, UNX, W

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1XDY \| pdb_00001xdy	Download File View File

Structural and Biochemical Identification of a Novel Bacterial Oxidoreductase, W-containing cofactor

Loschi, L., Brokx, S.J., Hills, T.L., Zhang, G., Bertero, M.G., Lovering, A.L., Weiner, J.H., Strynadka, N.C.

(2004) J Biological Chem 279: 50391-50400

Released	2004-10-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	Bacterial Sulfite Oxidase (protein)
Unique Ligands	MTE, W

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2E7Z \| pdb_00002e7z	Download File View File

Acetylene Hydratase from Pelobacter acetylenicus

Einsle, O., Kroneck, P.M.H., Seiffert, G.B., Messerschmidt, A.

(2007) Proc Natl Acad Sci U S A 104: 3073-3077

Released	2007-02-27
Method	X-RAY DIFFRACTION 1.26 Å
Organisms	Syntrophotalea acetylenica
Macromolecule	Acetylene hydratase Ahy (protein)
Unique Ligands	ACT, MGD, MPD, NA, SF4, W

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2OGX \| pdb_00002ogx	Download File View File

The crystal structure of the molybdenum storage protein from Azotobacter vinelandii loaded with polyoxotungstates (WSto)

Schemberg, J., Warkentin, E., Ermler, U.

(2007) Angew Chem Int Ed Engl 46: 2408-2413

Released	2007-04-24
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Azotobacter vinelandii
Macromolecule	Molybdenum storage protein subunit alpha (protein) Molybdenum storage protein subunit beta (protein)
Unique Ligands	ATP, MG, PO4, W, WO3

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3D6A \| pdb_00003d6a	Download File View File

Crystal structure of the 2H-phosphatase domain of Sts-2 in complex with tungstate.

Chen, Y., Carpino, N., Nassar, N.

(2009) Biochemistry 48: 1681-1690

Released	2009-03-03
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mus musculus
Macromolecule	Sts-2 protein (protein)
Unique Ligands	MG, NA, W

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3FYH \| pdb_00003fyh	Download File View File

Recombinase in complex with ADP and metatungstate

Li, Y., He, Y., Luo, Y.

(2009) Biochemistry 48: 6805-6810

Released	2009-09-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ADP, MG, NA, W

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3LR1 \| pdb_00003lr1	Download File View File

The crystal structure of the tungstate ABC transporter from Geobacter sulfurreducens

Zhang, R., Volkart, L., Buck, K., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2010-03-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Geobacter sulfurreducens PCA
Macromolecule	Tungstate ABC transporter, periplasmic tungstate-binding protein (protein)
Unique Ligands	GOL, W

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4PE5 \| pdb_00004pe5	Download File View File

Crystal Structure of GluN1a/GluN2B NMDA Receptor Ion Channel

Karakas, E., Furukawa, H.

(2014) Science 344: 992-997

Released	2014-06-04
Method	X-RAY DIFFRACTION 3.96 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor ionotropic, NMDA 1 (protein) Glutamate receptor ionotropic, NMDA 2B (protein)
Unique Ligands	GLU, GLY, NAG, QEL, W
Unique branched monosaccharides	BMA, MAN, NAG

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4YZS \| pdb_00004yzs	Download File View File

Crystal structures reveal transient PERK luminal domain tetramerization in ER stress signaling

Carrara, M., Prischi, F., Ali, M.M.U.

(2015) EMBO J 34: 1589-1600

Released	2015-05-13
Method	X-RAY DIFFRACTION 3.14 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 2-alpha kinase 3 (protein)
Unique Ligands	W

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4Z12 \| pdb_00004z12	Download File View File

Recombinantly expressed latent aurone synthase (polyphenol oxidase) co-crystallized with hexatungstotellurate(VI)

Molitor, C., Mauracher, S.G., Rompel, A.

(2016) Proc Natl Acad Sci U S A 113: E1806-E1815

Released	2016-03-23
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Coreopsis grandiflora
Macromolecule	Aurone synthase (protein)
Unique Ligands	CU, GOL, TE, TEW, W

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4Z13 \| pdb_00004z13	Download File View File

Recombinantly expressed latent aurone synthase (polyphenol oxidase) co-crystallized with hexatungstotellurate(VI) and soaked in H2O2

Molitor, C., Mauracher, S.G., Rompel, A.

(2016) Proc Natl Acad Sci U S A 113: E1806-E1815

Released	2016-03-23
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Coreopsis grandiflora
Macromolecule	Aurone synthase (protein)
Unique Ligands	CU, GOL, O, TE, TEW, W

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4Z3W \| pdb_00004z3w	Download File View File

Active site complex BamBC of Benzoyl Coenzyme A reductase in complex with 1,5 Dienoyl-CoA

Weinert, T., Kung, J., Weidenweber, S., Huwiler, S., Boll, M., Ermler, U.

(2015) Nat Chem Biol 11: 586-591

Released	2015-06-24
Method	X-RAY DIFFRACTION 2.208 Å
Organisms	Geobacter metallireducens GS-15
Macromolecule	Benzoyl-CoA reductase, putative (protein) Iron-sulfur cluster-binding oxidoreductase, putative benzoyl-CoA reductase electron transfer protein (protein)
Unique Ligands	4KX, MG, MTE, SF4, UNL, W

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4Z3X \| pdb_00004z3x	Download File View File

Active site complex BamBC of Benzoyl Coenzyme A reductase in complex with 1-Monoenoyl-CoA

Weinert, T., Kung, J.W., Weidenweber, S., Huwiler, S.G., Boll, M., Ermler, U.

(2015) Nat Chem Biol 11: 586-591

Released	2015-06-24
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Geobacter metallireducens GS-15
Macromolecule	Benzoyl-CoA reductase, putative (protein) Iron-sulfur cluster-binding oxidoreductase, putative benzoyl-CoA reductase electron transfer protein (protein)
Unique Ligands	4KX, MG, MTE, PG4, PGE, SF4, UNL, W

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4Z3Y \| pdb_00004z3y	Download File View File

Active site complex BamBC of Benzoyl Coenzyme A reductase in complex with Benzoyl-CoA

Weinert, T., Kung, J.W., Weidenweber, S., Huwiler, S.G., Boll, M., Ermler, U.

(2015) Nat Chem Biol 11: 586-591

Released	2015-07-01
Method	X-RAY DIFFRACTION 2.359 Å
Organisms	Geobacter metallireducens GS-15
Macromolecule	Benzoyl-CoA reductase, putative (protein) Iron-sulfur cluster-binding oxidoreductase, putative benzoyl-CoA reductase electron transfer protein (protein)
Unique Ligands	BYC, MG, MTE, SF4, UNL, W

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4Z3Z \| pdb_00004z3z	Download File View File

Active site complex BamBC of Benzoyl Coenzyme A reductase in complex with Zinc

Weinert, T., Kung, J.W., Weidenweber, S., Huwiler, S.G., Boll, M., Ermler, U.

(2015) Nat Chem Biol 11: 586-591

Released	2015-06-24
Method	X-RAY DIFFRACTION 2.666 Å
Organisms	Geobacter metallireducens GS-15
Macromolecule	Benzoyl-CoA reductase, putative (protein) Iron-sulfur cluster-binding oxidoreductase, putative benzoyl-CoA reductase electron transfer protein (protein)
Unique Ligands	MG, MTE, SF4, UNL, W, ZN

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4Z40 \| pdb_00004z40	Download File View File

Active site complex BamBC of Benzoyl Coenzyme A reductase as isolated

Weinert, T., Kung, J.W., Weidenweber, S., Huwiler, S.G., Boll, M., Ermler, U.

(2015) Nat Chem Biol 11: 586-591

Released	2015-06-24
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Geobacter metallireducens GS-15
Macromolecule	Benzoyl-CoA reductase, putative (protein) Iron-sulfur cluster-binding oxidoreductase, putative benzoyl-CoA reductase electron transfer protein (protein)
Unique Ligands	MG, MTE, SF4, UNL, W, ZN

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5EJK \| pdb_00005ejk	Download File View File

Crystal structure of the Rous sarcoma virus intasome

Yin, Z., Shi, K., Banerjee, S., Aihara, H.

(2016) Nature 530: 362-366

Released	2016-02-17
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Homo sapiens Rous sarcoma virus (strain Schmidt-Ruppin E) Rous sarcoma virus - Prague C
Macromolecule	Gag-Pro-Pol polyprotein (protein) DNA (5'-D(APAPTPGPTPTPGPTPCPTPTPAPTPGPCPAPAPTPAPCPTPC)-3') (nucleic acid) DNA (5'-D(APGPTPGPTPCPTPT)-3') (nucleic acid) DNA (5'-D(CPTPTPCPTPCPTPC)-3') (nucleic acid) RSV Integrase (nucleic acid)
Unique Ligands	W, ZN

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5ERV \| pdb_00005erv	Download File View File

Ternary complex of GephE - ADP - Tungsten cluster

Kasaragod, V.B., Schindelin, H.

(2016) Structure 24: 782-788

Released	2016-05-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rattus norvegicus
Macromolecule	Gephyrin (protein)
Unique Ligands	ACT, ADP, CA, MG, MPD, W, WO4

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5T5I \| pdb_00005t5i	Download File View File

TUNGSTEN-CONTAINING FORMYLMETHANOFURAN DEHYDROGENASE FROM METHANOTHERMOBACTER WOLFEII, ORTHORHOMBIC FORM AT 1.9 A

Wagner, T., Ermler, U., Shima, S.

(2016) Science 354: 114-117

Released	2016-10-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanothermobacter sp. CaT2 Methanothermobacter wolfeii
Macromolecule	Unique protein chains: 6
Unique Ligands	CA, GOL, H2S, K, MG, MGD, NA, SF4, W, ZN

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5T5M \| pdb_00005t5m	Download File View File

TUNGSTEN-CONTAINING FORMYLMETHANOFURAN DEHYDROGENASE FROM METHANOTHERMOBACTER WOLFEII, TRIGONAL FORM AT 2.5 A.

Wagner, T., Ermler, U., Shima, S.

(2016) Science 354: 114-117

Released	2016-10-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Methanothermobacter wolfeii
Macromolecule	Unique protein chains: 6
Unique Ligands	GOL, H2S, K, MG, MGD, SF4, W, ZN

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5T61 \| pdb_00005t61	Download File View File

TUNGSTEN-CONTAINING FORMYLMETHANOFURAN DEHYDROGENASE FROM METHANOTHERMOBACTER WOLFEII, TRICLINIC FORM AT 2.55 A

Wagner, T., Ermler, U., Shima, S.

(2016) Science 354: 114-117

Released	2016-10-19
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Methanothermobacter sp. CaT2 Methanothermobacter wolfeii
Macromolecule	Unique protein chains: 6
Unique Ligands	CL, H2S, K, MFN, MG, MGD, NA, SF4, W, ZN

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6SDR \| pdb_00006sdr	Download File View File

W-formate dehydrogenase from Desulfovibrio vulgaris - Oxidized form

Oliveira, A.R., Mota, C., Mourato, C., Domingos, R.M., Santos, M.F.A., Gesto, D., Guigliarelli, B., Santos-Silva, T., Romao, M.J., Pereira, I.C.

(2020) ACS Catal

Released	2020-03-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Nitratidesulfovibrio vulgaris str. Hildenborough
Macromolecule	Formate dehydrogenase, alpha subunit, selenocysteine-containing (protein) Formate dehydrogenase, beta subunit, putative (protein)
Unique Ligands	GOL, H2S, MGD, SF4, W

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6SDV \| pdb_00006sdv	Download File View File

W-formate dehydrogenase from Desulfovibrio vulgaris - Formate reduced form

Oliveira, A.R., Mota, C., Mourato, C., Domingos, R.M., Santos, M.F.A., Gesto, D., Guigliarelli, B., Santos-Silva, T., Romao, M.J., Pereira, I.C.

(2020) ACS Catal

Released	2020-03-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Nitratidesulfovibrio vulgaris str. Hildenborough
Macromolecule	Formate dehydrogenase, alpha subunit, selenocysteine-containing,Formate dehydrogenase, alpha subunit, selenocysteine-containing,W-formate dehydrogenase - alpha subunit (protein) Formate dehydrogenase, beta subunit, putative (protein)
Unique Ligands	GOL, H2S, MGD, NO3, PEG, SF4, W

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7E5Z \| pdb_00007e5z	Download File View File

Dehydrogenase holoenzyme

Roh, S.H., Park, J.S., Heo, Y.Y.

To be published

Released	2022-02-23
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Methylorubrum extorquens AM1
Macromolecule	Formate dehydrogenase (protein) Tungsten-containing formate dehydrogenase beta subunit (protein)
Unique Ligands	FES, FMN, MGD, SF4, W

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7VW6 \| pdb_00007vw6	Download File View File

Cryo-EM Structure of Formate Dehydrogenase 1 from Methylorubrum extorquens AM1

Yoshikawa, T., Makino, F., Miyata, T., Suzuki, Y., Tanaka, H., Namba, K., Sowa, K., Kitazumi, Y., Shirai, O.

(2022) Chem Commun (Camb) 58: 6478-6481

Released	2022-06-01
Method	ELECTRON MICROSCOPY 2.19 Å
Organisms	Methylorubrum extorquens AM1
Macromolecule	Formate dehydrogenase (protein) Tungsten-containing formate dehydrogenase beta subunit (protein)
Unique Ligands	FES, FMN, MGD, SF4, UNX, W

1 to 25 of 45 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1H0H | pdb_00001h0h

1XDY | pdb_00001xdy

2E7Z | pdb_00002e7z

2OGX | pdb_00002ogx

3D6A | pdb_00003d6a

3FYH | pdb_00003fyh

3LR1 | pdb_00003lr1

4PE5 | pdb_00004pe5

4YZS | pdb_00004yzs

4Z12 | pdb_00004z12

4Z13 | pdb_00004z13

4Z3W | pdb_00004z3w

4Z3X | pdb_00004z3x

4Z3Y | pdb_00004z3y

4Z3Z | pdb_00004z3z

4Z40 | pdb_00004z40

5EJK | pdb_00005ejk

5ERV | pdb_00005erv

5T5I | pdb_00005t5i

5T5M | pdb_00005t5m

5T61 | pdb_00005t61

6SDR | pdb_00006sdr

6SDV | pdb_00006sdv

7E5Z | pdb_00007e5z

7VW6 | pdb_00007vw6