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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 22 Structures.

Refinements

Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

	Homo sapiens (16)
	Mus musculus (5)
	Bos taurus (2)
	Gallus gallus (1)
	Platynereis dumerilii (1)
	Rattus norvegicus (1)
	Severe acute respiratory syndrome coronavirus 2 (1)
	Synechocystis sp. PCC 6803 (1)

Taxonomy

	Eukaryota (20)
	Bacteria (1)
	Eukaryota (eukaryotes) (1)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (21)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (22)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (4)
	2.0 - 2.5 (8)
	2.5 - 3.0 (5)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (4)
	2000 - 2004 (3)
	2005 - 2009 (7)
	2010 - 2014 (2)
	2015 - 2019 (4)
	2020 - 2024 (1)

Enzyme Classification Name

	Oxidoreductases (2)
	Transferases (2)
	Isomerases (1)

Symmetry Type

	Asymmetric (15)
	Cyclic (9)
	Dihedral (2)

SCOP Classification

	All alpha proteins (9)
	All beta proteins (8)
	Alpha and beta proteins (a/b) (1)
	Artifacts (1)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 22 of 22 Structures

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1CBR \| pdb_00001cbr	Download File View File

CRYSTAL STRUCTURE OF CELLULAR RETINOIC-ACID-BINDING PROTEINS I AND II IN COMPLEX WITH ALL-TRANS-RETINOIC ACID AND A SYNTHETIC RETINOID

Kleywegt, G.J., Bergfors, T., Jones, T.A.

(1994) Structure 2: 1241-1258

Released	1995-01-26
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Mus musculus
Macromolecule	CELLULAR RETINOIC ACID BINDING PROTEIN TYPE I (protein)
Unique Ligands	REA

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1CBS \| pdb_00001cbs	Download File View File

CRYSTAL STRUCTURE OF CELLULAR RETINOIC-ACID-BINDING PROTEINS I AND II IN COMPLEX WITH ALL-TRANS-RETINOIC ACID AND A SYNTHETIC RETINOID

Kleywegt, G.J., Bergfors, T., Jones, T.A.

(1994) Structure 2: 1241-1258

Released	1995-01-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	CELLULAR RETINOIC ACID BINDING PROTEIN TYPE II (protein)
Unique Ligands	REA

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1FEM \| pdb_00001fem	Download File View File

CRYSTALLOGRAPHIC STUDIES ON COMPLEXES BETWEEN RETINOIDS AND PLASMA RETINOL-BINDING PROTEIN

Zanotti, G., Marcello, M., Malpeli, G., Sartori, G., Berni, R.

(1994) J Biological Chem 269: 29613-29620

Released	1994-11-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	RETINOL BINDING PROTEIN (protein)
Unique Ligands	REA

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1G5Y \| pdb_00001g5y	Download File View File

THE 2.0 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE RXRALPHA LIGAND BINDING DOMAIN TETRAMER IN THE PRESENCE OF A NON-ACTIVATING RETINOIC ACID ISOMER.

Gampe Jr., R.T., Montana, V.G., Lambert, M.H., Wisely, G.B., Milburn, M.V., Xu, H.E.

(2000) Genes Dev 14: 2229-2241

Released	2001-05-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	RETINOIC ACID RECEPTOR RXR-ALPHA (protein)
Unique Ligands	REA

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1GX9 \| pdb_00001gx9	Download File View File

BOVINE BETA-LACTOGLOBULIN COMPLEXED WITH RETINOIC ACID, TRIGONAL LATTICE Z

Kontopidis, G., Sawyer, L.

(2002) J Mol Biology 318: 1043

Released	2002-06-13
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Bos taurus
Macromolecule	BETA-LACTOGLOBULIN (protein)
Unique Ligands	REA

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1N4H \| pdb_00001n4h	Download File View File

Characterization of ligands for the orphan nuclear receptor RORbeta

Stehlin-Gaon, C., Willmann, D., Sanglier, S., Van Dorsselaer, A., Renaud, J.-P., Moras, D., Schuele, R.

(2003) Nat Struct Biol 10: 820-825

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Nuclear Receptor ROR-beta (protein) Steroid Receptor Coactivator-1 (protein)
Unique Ligands	REA

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1RLB \| pdb_00001rlb	Download File View File

RETINOL BINDING PROTEIN COMPLEXED WITH TRANSTHYRETIN

Monaco, H.L., Rizzi, M., Coda, A.

(1995) Science 268: 1039-1041

Released	1996-04-11
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Gallus gallus Homo sapiens
Macromolecule	RETINOL BINDING PROTEIN (protein) TRANSTHYRETIN (protein)
Unique Ligands	REA

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2ACL \| pdb_00002acl	Download File View File

Liver X-Receptor alpha Ligand Binding Domain with SB313987

Jaye, M.C., Krawiec, J.A., Campobasso, N., Smallwood, A., Qiu, C., Lu, Q., Kerrigan, J.J.

(2005) J Med Chem 48: 5419-5422

Released	2005-09-20
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Oxysterols receptor LXR-alpha (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	L05, REA

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2FR3 \| pdb_00002fr3	Download File View File

Crystal Structure of Cellular Retinoic Acid Binding Protein Type II in Complex with All-Trans-Retinoic Acid at 1.48 Angstroms Resolution

Vaezeslami, S., Geiger, J.H.

(2006) J Mol Biology 363: 687-701

Released	2006-09-19
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Homo sapiens
Macromolecule	Cellular retinoic acid binding protein 2 (protein)
Unique Ligands	ACT, REA

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2G78 \| pdb_00002g78	Download File View File

Crystal Structure of the R132K:Y134F Mutant of Cellular Retinoic Acid Binding Protein Type II in Complex with All-Trans-Retinoic Acid at 1.70 Angstroms Resolution

Vaezeslami, S., Geiger, J.H.

(2007) J Am Chem Soc 129: 6140-6148

Released	2007-04-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Cellular retinoic acid-binding protein 2 (protein)
Unique Ligands	NA, REA

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2LBD \| pdb_00002lbd	Download File View File

LIGAND-BINDING DOMAIN OF THE HUMAN RETINOIC ACID RECEPTOR GAMMA BOUND TO ALL-TRANS RETINOIC ACID

Renaud, J.-P., Rochel, N., Ruff, M., Moras, D., Structural Proteomics in Europe (SPINE)

(1995) Nature 378: 681-689

Released	1997-11-12
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Homo sapiens
Macromolecule	RETINOIC ACID RECEPTOR GAMMA (protein)
Unique Ligands	REA

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2VE3 \| pdb_00002ve3	Download File View File

Retinoic acid bound cyanobacterial CYP120A1

Kuhnel, K., Ke, N., Sligar, S.G., Schuler, M.A., Schlichting, I.

(2008) Biochemistry 47: 6552

Released	2008-04-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	PUTATIVE CYTOCHROME P450 120 (protein)
Unique Ligands	HEM, REA

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3A9E \| pdb_00003a9e	Download File View File

Crystal structure of a mixed agonist-bound RAR-alpha and antagonist-bound RXR-alpha heterodimer ligand binding domains

Sato, Y., Duclaud, S., Peluso-Iltis, C., Poussin, P., Moras, D., Rochel, N., Structural Proteomics in Europe (SPINE)

(2010) PLoS One 5: e15119-e15119

Released	2010-10-06
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	13-mer (LXXLL motif) from Nuclear receptor coactivator 2 (protein) Retinoic acid receptor RXR-alpha (protein) Retinoic acid receptor alpha (protein)
Unique Ligands	754, REA

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3CWK \| pdb_00003cwk	Download File View File

Crystal Structure of the R132K:Y134F:R111L:T54V:L121E Mutant of Cellular Retinoic Acid Binding Protein Type II in Complex with All-trans-Retinoic Acid at 1.57 Angstroms Resolution

Vaezeslami, S., Geiger, J.H.

(2008) Acta Crystallogr D Biol Crystallogr 64: 1228-1239

Released	2008-09-09
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Cellular retinoic acid-binding protein 2 (protein)
Unique Ligands	REA, SO4

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3FAL \| pdb_00003fal	Download File View File

humanRXR alpha & mouse LXR alpha complexed with Retenoic acid and GSK2186

Chao, E.Y., Caravella, J.A., Watson, M.A., Campobasso, N., Ghisletti, S., Billin, A.N., Galardi, C., Willson, T.M., Zuercher, W.J., Collins, J.L.

(2008) J Med Chem 51: 5758-5765

Released	2009-04-14
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Oxysterols receptor LXR-alpha (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	LO2, REA

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3FC6 \| pdb_00003fc6	Download File View File

hRXRalpha & mLXRalpha with an indole Pharmacophore, SB786875

Washburn, D.G., Hoang, T.H., Campobasso, N., Smallwood, A., Parks, D.J., Webb, C.L., Frank, K., Nord, M., Duraiswami, C., Evans, C., Jaye, M., Thompson, S.K.

(2009) Bioorg Med Chem Lett 19: 1097-1100

Released	2009-02-10
Method	X-RAY DIFFRACTION 2.063 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Nr1h3 protein (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	LX2, REA

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4DM8 \| pdb_00004dm8	Download File View File

Crystal structure of RARb LBD in complex with 9cis retinoic acid

Osz, J., Br livet, Y., Peluso-Iltis, C., Cura, V., Eiler, S., Ruff, M., Bourguet, W., Rochel, N., Moras, D.

(2012) Proc Natl Acad Sci U S A 109: E588-E594

Released	2012-03-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 1 (protein) Retinoic acid receptor beta (protein)
Unique Ligands	REA

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4TNS \| pdb_00004tns	Download File View File

Structure of Pin1 PPIase domain bound with all-trans retinoic acid

Li, W.Z., Zhang, Y.

To be published

Released	2015-04-08
Method	X-RAY DIFFRACTION 1.33 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (protein)
Unique Ligands	REA

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5FHZ \| pdb_00005fhz	Download File View File

Human aldehyde dehydrogenase 1A3 complexed with NAD(+) and retinoic acid

Moretti, A., Rizzi, M., Garavaglia, S.

(2016) Sci Rep 6: 35710-35710

Released	2016-11-02
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Aldehyde dehydrogenase family 1 member A3 (protein)
Unique Ligands	NAD, REA

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5UAN \| pdb_00005uan	Download File View File

Crystal structure of multi-domain RAR-beta-RXR-alpha heterodimer on DNA

Chandra, V., Wu, D., Kim, Y., Rastinejad, F.

(2017) Nat Commun 8: 868-868

Released	2017-10-18
Method	X-RAY DIFFRACTION 3.508 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 2 (protein) Retinoic acid receptor RXR-alpha (protein) Retinoic acid receptor beta (protein) DNA (5'-D(CPTPAPGPGPTPCPAPAPAPGPGPTPCPAPGPC)-3') (nucleic acid) DNA (5'-D(GPCPTPGPAPCPCPTPTPTPGPAPCPCPTPAPG)-3') (nucleic acid)
Unique Ligands	9CR, REA, ZN

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6EU9 \| pdb_00006eu9	Download File View File

Crystal structure of Platynereis dumerilii RAR ligand-binding domain in complex with all-trans retinoic acid

Handberg-Thorsager, M., Gutierrez-Mazariegos, J., Arold, S.T., Nadendla, E.K., Bertucci, P.Y., Germain, P., Tomancak, P., Pierzchalski, K., Jones, J.W., Albalat, R., Kane, M.A., Bourguet, W., Laudet, V., Arendt, D., Schubert, M.

(2018) Sci Adv 4: eaao1261-eaao1261

Released	2018-03-14
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Platynereis dumerilii
Macromolecule	Retinoic acid receptor (protein)
Unique Ligands	REA

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7Y42 \| pdb_00007y42	Download File View File

Cryo-EM structure of the SARS-CoV-2 spike glycoprotein in complex with all-trans retinoic acid

Xiang, Y., Wang, L.

(2022) mBio 13: e0148522-e0148522

Released	2022-07-06
Method	ELECTRON MICROSCOPY 3.45 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG, REA

1 to 22 of 22 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1CBR | pdb_00001cbr

1CBS | pdb_00001cbs

1FEM | pdb_00001fem

1G5Y | pdb_00001g5y

1GX9 | pdb_00001gx9

1N4H | pdb_00001n4h

1RLB | pdb_00001rlb

2ACL | pdb_00002acl

2FR3 | pdb_00002fr3

2G78 | pdb_00002g78

2LBD | pdb_00002lbd

2VE3 | pdb_00002ve3

3A9E | pdb_00003a9e

3CWK | pdb_00003cwk

3FAL | pdb_00003fal

3FC6 | pdb_00003fc6

4DM8 | pdb_00004dm8

4TNS | pdb_00004tns

5FHZ | pdb_00005fhz

5UAN | pdb_00005uan

6EU9 | pdb_00006eu9

7Y42 | pdb_00007y42