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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Zhang, W.Z."

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Search Summary

This query matches 448 Structures.

Refinements

Structure Determination Methodology

experimental (448)

Scientific Name of Source Organism

	Homo sapiens (143)
	synthetic construct (36)
	Mus musculus (32)
	Rattus norvegicus (27)
	Coxsackievirus B1 (26)
	Severe acute respiratory syndrome coronavirus 2 (22)
	Arabidopsis thaliana (13)
	Escherichia coli K-12 (12)
	Zea mays (11)
	Rhodospirillum rubrum ATCC 11170 (10)

More...

Taxonomy

	Eukaryota (285)
	Bacteria (106)
	Riboviria (88)
	other sequences (36)
	Duplodnaviria (6)
	Archaea (5)
	unclassified sequences (4)
	Varidnaviria (3)
	Eukaryota (eukaryotes) (2)
	Monodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (284)
	ELECTRON MICROSCOPY (156)
	SOLUTION NMR (8)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (416)
	DNA (41)
	RNA (26)

Refinement Resolution (Å)

	1.0 - 1.5 (25)
	1.5 - 2.0 (76)
	2.0 - 2.5 (102)
	2.5 - 3.0 (105)
	3.0 - 3.5 (82)
	3.5 - 4.0 (39)
	4.0 - 4.5 (2)
	> 4.5 (9)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (5)
	2005 - 2009 (15)
	2010 - 2014 (29)
	2015 - 2019 (102)
	2020 - 2024 (272)
	2025 - 2029 (19)

Enzyme Classification Name

	Hydrolases (133)
	Transferases (64)
	Oxidoreductases (23)
	Lyases (11)
	Isomerases (2)

Membrane Protein Annotation

	PDBTM (56)
	mpstruc (48)
	MemProtMD (42)
	OPM (24)

Symmetry Type

	Asymmetric (220)
	Cyclic (128)
	Dihedral (35)
	Icosahedral (34)
	Helical (2)

SCOP Classification

	All beta proteins (29)
	Alpha and beta proteins (a+b) (35)
	Alpha and beta proteins (a/b) (16)
	All alpha proteins (13)
	Artifacts (13)
	Small proteins (2)

AllSelected

1 to 25 of 448 Structures

Page 1 of 18

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1ATL \| pdb_00001atl	Download File View File

Structural interaction of natural and synthetic inhibitors with the VENOM METALLOPROTEINASE, ATROLYSIN C (FORM-D)

Zhang, D., Botos, I., Gomis-Rueth, F.-X., Doll, R., Blood, C., Njoroge, F.G., Fox, J.W., Bode, W., Meyer, E.F.

(1994) Proc Natl Acad Sci U S A 91: 8447-8451

Released	1995-10-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Crotalus atrox
Macromolecule	Snake venom metalloproteinase atrolysin-D (protein)
Unique Ligands	0QI, CA, ZN

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1DTH \| pdb_00001dth	Download File View File

METALLOPROTEASE

Botos, I., Scapozza, L., Zhang, D., Liotta, L.A., Meyer, E.F.

(1996) Proc Natl Acad Sci U S A 93: 2749-2754

Released	1997-02-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Crotalus atrox
Macromolecule	ATROLYSIN C (protein)
Unique Ligands	BAT, CA, ZN

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1HTD \| pdb_00001htd	Download File View File

STRUCTURAL INTERACTION OF NATURAL AND SYNTHETIC INHIBITORS WITH THE VENOM METALLOPROTEINASE, ATROLYSIN C (HT-D)

Zhang, D., Botos, I., Gomis-Rueth, F.-X., Doll, R., Blood, C., Njoroge, F.G., Fox, J.W., Bode, W., Meyer, E.F.

(1994) Proc Natl Acad Sci U S A 91: 8447-8451

Released	1995-09-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Crotalus atrox
Macromolecule	ATROLYSIN C (protein)
Unique Ligands	CA, ZN

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1HYN \| pdb_00001hyn	Download File View File

CRYSTAL STRUCTURE OF THE CYTOPLASMIC DOMAIN OF HUMAN ERYTHROCYTE BAND-3 PROTEIN

Zhang, D., Kiyatkin, A., Bolin, J.T., Low, P.S.

(2000) Blood 96: 2925-2933

Released	2001-05-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	BAND 3 ANION TRANSPORT PROTEIN (protein)

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1KS4 \| pdb_00001ks4	Download File View File

The structure of Aspergillus niger endoglucanase-palladium complex

Khademi, S., Zhang, D., Swanson, S.M., Wartenberg, A., Witte, C., Meyer, E.F.

(2002) Acta Crystallogr D Biol Crystallogr 58: 660-667

Released	2003-01-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Aspergillus niger
Macromolecule	Endoglucanase A (protein)
Unique Ligands	PD

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1KS5 \| pdb_00001ks5	Download File View File

Structure of Aspergillus niger endoglucanase

Khademi, S., Zhang, D., Swanson, S.M., Wartenberg, A., Witte, C., Meyer, E.F.

(2002) Acta Crystallogr D Biol Crystallogr 58: 660-667

Released	2003-01-21
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Aspergillus niger
Macromolecule	Endoglucanase A (protein)

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1M53 \| pdb_00001m53	Download File View File

CRYSTAL STRUCTURE OF ISOMALTULOSE SYNTHASE (PALI) FROM KLEBSIELLA SP. LX3

Li, N., Swaminathan, K.

(2003) J Biological Chem 278: 35428-35434

Released	2003-07-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Klebsiella sp. LX3
Macromolecule	Isomaltulose Synthase (protein)

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1NES \| pdb_00001nes	Download File View File

STRUCTURE OF THE PRODUCT COMPLEX OF ACETYL-ALA-PRO-ALA WITH PORCINE PANCREATIC ELASTASE AT 1.65 ANGSTROMS RESOLUTION

Meyer Junior, E.F., Radhakrishnan, R., M Cole, G., Presta, L.G.

(1986) J Mol Biology 189: 533-539

Released	1996-01-29
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Sus scrofa
Macromolecule	ACETYL-ALA-PRO-ALA (protein) ELASTASE (protein)
Unique Ligands	CA, SO4

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1PVD \| pdb_00001pvd	Download File View File

CRYSTAL STRUCTURE OF THE THIAMIN DIPHOSPHATE DEPENDENT ENZYME PYRUVATE DECARBOXYLASE FROM THE YEAST SACCHAROMYCES CEREVISIAE AT 2.3 ANGSTROMS RESOLUTION

Furey, W., Arjunan, P.

(1996) J Mol Biology 256: 590-600

Released	1995-07-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PYRUVATE DECARBOXYLASE (protein)
Unique Ligands	MG, TPP

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1QK6 \| pdb_00001qk6	Download File View File

Solution structure of huwentoxin-I by NMR

Qu, Y., Liang, S., Ding, J., Liu, X., Zhang, R., Gu, X.

(1997) J Protein Chem 16: 565-574

Released	1999-08-20
Method	SOLUTION NMR
Organisms	Cyriopagopus schmidti
Macromolecule	HUWENTOXIN-I (protein)

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1U6D \| pdb_00001u6d	Download File View File

Crystal structure of the Kelch domain of human Keap1

Li, X., Zhang, D., Hannink, M., Beamer, L.J.

(2004) J Biological Chem 279: 54750-54758

Released	2004-10-12
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	kelch-like ECH-associated protein 1 (protein)

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1ZGK \| pdb_00001zgk	Download File View File

1.35 angstrom structure of the Kelch domain of Keap1

Li, X., Bottoms, C.A., Hannink, M., Beamer, L.J.

(2005) Acta Crystallogr D Biol Crystallogr 61: 1335-1342

Released	2005-10-04
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	Kelch-like ECH-associated protein 1 (protein)

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2HNG \| pdb_00002hng	Download File View File

The Crystal Structure of Protein of Unknown Function SP1558 from Streptococcus pneumoniae

Kim, Y., Zhang, D., Zhou, M., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2006) To be published

Released	2006-08-15
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	Hypothetical protein (protein)

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2JY5 \| pdb_00002jy5	Download File View File

NMR structure of Ubiquilin 1 UBA domain

Zhang, D., Raasi, S., Fushman, D.

(2008) J Mol Biology 377: 162-180

Released	2008-03-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ubiquilin-1 (protein)

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2JY6 \| pdb_00002jy6	Download File View File

Solution structure of the complex of ubiquitin and ubiquilin 1 UBA domain

Zhang, D., Raasi, S., Fushman, D.

(2008) J Mol Biology 377: 162-180

Released	2008-03-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ubiquilin-1 (protein) Ubiquitin protein (protein)

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2MR9 \| pdb_00002mr9	Download File View File

NMR structure of UBA domain of DNA-damage-inducible 1 protein (Ddi1)

Zhang, D., Fushman, D.

(2015) Structure 23: 542-557

Released	2015-02-04
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	DNA damage-inducible protein 1 (protein)

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2MRO \| pdb_00002mro	Download File View File

Structure of the complex of ubiquitin and the UBA domain from DNA-damage-inducible 1 protein (Ddi1)

Zhang, D., Fushman, D.

(2015) Structure 23: 542-557

Released	2015-02-04
Method	SOLUTION NMR
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	DNA damage-inducible protein 1 (protein) Polyubiquitin-B (protein)

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2MRP \| pdb_00002mrp	Download File View File

NMR solution structure of the Ubiquitin like domain (UBL) of DNA-damage-inducible 1 protein (Ddi1)

Nowicka, U., Fushman, D., Chen, T.

(2015) Structure 23: 542-557

Released	2015-03-11
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	DNA damage-inducible protein 1 (protein)

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2MWS \| pdb_00002mws	Download File View File

Structure of the complex of ubiquitin and the ubiquitin-like (UBL) domain of Ddi1

Fushman, D., Nowicka, U., Walker, O.

(2015) Structure 23: 542-557

Released	2015-03-25
Method	SOLUTION NMR
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	DNA damage-inducible protein 1 (protein) Ubiquitin (protein)

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2W0J \| pdb_00002w0j	Download File View File

Crystal structure of Chk2 in complex with NSC 109555, a specific inhibitor

Lountos, G.T., Tropea, J.E., Zhang, D., Jobson, A.G., Pommier, Y., Shoemaker, R.H., Waugh, D.S.

(2009) Protein Sci 18: 92

Released	2009-02-10
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE-PROTEIN KINASE CHK2 (protein)
Unique Ligands	NO3, ZAT

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2XK9 \| pdb_00002xk9	Download File View File

Structural analysis of checkpoint kinase 2 (Chk2) in complex with inhibitor PV1533

Lountos, G.T., Jobson, A.G., Tropea, J.E., Self, C., Shoemaker, R.H., Pommier, Y., Waugh, D.S.

(2011) J Struct Biol 176: 292

Released	2011-07-20
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	CHECKPOINT KINASE 2 (protein)
Unique Ligands	XK9

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2YIQ \| pdb_00002yiq	Download File View File

Structural analysis of checkpoint kinase 2 in complex with inhibitor PV1322

Lountos, G.T., Jobson, A.G., Tropea, J.E., Self, C., Zhang, G., Pommier, Y., Shoemaker, R.H., Waugh, D.S.

(2011) FEBS Lett 585: 3245

Released	2011-09-07
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE-PROTEIN KINASE CHK2 (protein)
Unique Ligands	NO3, YIQ

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2YIR \| pdb_00002yir	Download File View File

Structural analysis of checkpoint kinase 2 in complex with inhibitor PV1352

Lountos, G.T., Jobson, A.G., Tropea, J.E., Self, C., Zhang, G., Pommier, Y., Shoemaker, R.H., Waugh, D.S.

(2011) FEBS Lett 585: 3245

Released	2011-09-07
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE-PROTEIN KINASE CHK2 (protein)
Unique Ligands	NO3, YIR

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2YIT \| pdb_00002yit	Download File View File

Structural analysis of checkpoint kinase 2 in complex with PV1162, a novel inhibitor

Lountos, G.T., Jobson, A.G., Tropea, J.E., Self, C., Zhang, G., Pommier, Y., Shoemaker, R.H., Waugh, D.S.

(2011) FEBS Lett 585: 3245

Released	2011-09-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE-PROTEIN KINASE CHK2 (protein)
Unique Ligands	NO3, YIT

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3CXD \| pdb_00003cxd	Download File View File

Crystal structure of anti-osteopontin antibody 23C3 in complex with its epitope peptide

Du, J., Yang, H., Zhong, C., Ding, J.

(2008) J Mol Biology 382: 835-842

Released	2008-10-14
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Fab fragment of anti-osteopontin antibody 23C3, Heavy chain (protein) Fab fragment of anti-osteopontin antibody 23C3, Light chain (protein) a peptide from osteopontin (protein)
Unique branched monosaccharides	BMA, MAN, NAG

1 to 25 of 448 Structures

Page 1 of 18

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ATL | pdb_00001atl

1DTH | pdb_00001dth

1HTD | pdb_00001htd

1HYN | pdb_00001hyn

1KS4 | pdb_00001ks4

1KS5 | pdb_00001ks5

1M53 | pdb_00001m53

1NES | pdb_00001nes

1PVD | pdb_00001pvd

1QK6 | pdb_00001qk6

1U6D | pdb_00001u6d

1ZGK | pdb_00001zgk

2HNG | pdb_00002hng

2JY5 | pdb_00002jy5

2JY6 | pdb_00002jy6

2MR9 | pdb_00002mr9

2MRO | pdb_00002mro

2MRP | pdb_00002mrp

2MWS | pdb_00002mws

2W0J | pdb_00002w0j

2XK9 | pdb_00002xk9

2YIQ | pdb_00002yiq

2YIR | pdb_00002yir

2YIT | pdb_00002yit

3CXD | pdb_00003cxd