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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Xu, J.H."

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Search Summary

This query matches 90 Structures.

Refinements

Structure Determination Methodology

experimental (90)

Scientific Name of Source Organism

	Vigna radiata (7)
	synthetic construct (7)
	Homo sapiens (6)
	Escherichia coli K-12 (5)
	Prunus dulcis (5)
	Pseudomonas sp. ECU1011 (5)
	Rhodococcus erythropolis (5)
	Streptomyces clavuligerus (5)
	Acinetobacter calcoaceticus (4)
	Priestia megaterium (4)

More...

Taxonomy

	Bacteria (57)
	Eukaryota (32)
	other sequences (7)

Experimental Method

X-RAY DIFFRACTION (90)

Polymer Entity Type

	Protein (90)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (29)
	2.0 - 2.5 (44)
	2.5 - 3.0 (14)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (23)
	2015 - 2019 (28)
	2020 - 2024 (37)

Enzyme Classification Name

	Hydrolases (25)
	Oxidoreductases (9)
	Lyases (6)
	Transferases (4)

Membrane Protein Annotation

	mpstruc (2)
	OPM (1)

Symmetry Type

	Cyclic (43)
	Asymmetric (44)
	Dihedral (10)

SCOP Classification

	Alpha and beta proteins (a+b) (9)
	Alpha and beta proteins (a/b) (14)
	Artifacts (8)
	All beta proteins (2)

AllSelected

1 to 25 of 90 Structures

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2HCU \| pdb_00002hcu	Download File View File

Crystal Structure Of Smu.1381 (or LeuD) from Streptococcus Mutans

Gao, Z.Q., Hou, H.F., Li, L.F., Liang, Y.H., Su, X.D., Dong, Y.H.

To be published

Released	2006-07-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptococcus mutans
Macromolecule	3-isopropylmalate dehydratase small subunit (protein)
Unique Ligands	SO4

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3DEZ \| pdb_00003dez	Download File View File

Crystal structure of Orotate phosphoribosyltransferase from Streptococcus mutans

Liu, C.P., Gao, Z.Q., Hou, H.F., Li, L.F., Su, X.D., Dong, Y.H.

(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66: 498-502

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptococcus mutans
Macromolecule	Orotate phosphoribosyltransferase (protein)
Unique Ligands	SO4

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3Q6B \| pdb_00003q6b	Download File View File

The high-resolution and new form crystal structure of BamA POTRA4-5 from E.coli

Gao, Z.Q., Zhang, H., Dong, Y.H.

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 734-738

Released	2011-08-10
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein assembly complex, YaeT protein (protein)

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3TKA \| pdb_00003tka	Download File View File

crystal structure and solution saxs of methyltransferase rsmh from E.coli

Gao, Z.Q., Wei, Y., Zhang, H., Dong, Y.H.

(2012) J Struct Biol 179: 29-40

Released	2012-05-30
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Escherichia coli K-12
Macromolecule	Ribosomal RNA small subunit methyltransferase H (protein)
Unique Ligands	CTN, PG4, SAM, SO4

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4DCM \| pdb_00004dcm	Download File View File

Crystal Structure of methyltransferase RlmG modifying G1835 of 23S rRNA in Escherichia coli

Zhang, H., Gao, Z.Q., Dong, Y.H.

(2012) RNA 18: 1500-1509

Released	2012-08-01
Method	X-RAY DIFFRACTION 2.297 Å
Organisms	Escherichia coli K-12
Macromolecule	Ribosomal RNA large subunit methyltransferase G (protein)
Unique Ligands	PEG, SAM

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4E0Q \| pdb_00004e0q	Download File View File

Crystal structure of MPN domain from COP9 signalosome

Zhang, H., Gao, Z.Q., Dong, Y.H.

(2012) FEBS Lett 586: 1147-1153

Released	2012-03-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Drosophila melanogaster
Macromolecule	COP9 signalosome complex subunit 6 (protein)

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4E8B \| pdb_00004e8b	Download File View File

Crystal structure of 16S rRNA Methyltransferase RsmE from E.coli

Zhang, H., Gao, Z.Q., Dong, Y.H.

(2012) J Mol Biology 423: 576-589

Released	2012-09-12
Method	X-RAY DIFFRACTION 2.249 Å
Organisms	Escherichia coli K-12
Macromolecule	Ribosomal RNA small subunit methyltransferase E (protein)

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4EEX \| pdb_00004eex	Download File View File

Crystal Structure of Lactococcus lactis Alcohol Dehydrogenase

Liu, X., Bastian, S., Snow, C.D., Brustad, E.M., Saleski, T., Xu, J.H., Meinhold, P., Arnold, F.H.

(2012) J Biotechnol 164: 188-195

Released	2012-09-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Lactococcus lactis subsp. lactis KF147
Macromolecule	Alcohol dehydrogenase 1 (protein)
Unique Ligands	PG4, ZN

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4EEZ \| pdb_00004eez	Download File View File

Crystal Structure of Lactococcus lactis Alcohol Dehydrogenase variant RE1

Liu, X., Bastian, S., Snow, C.D., Brustad, E.M., Saleski, T., Xu, J.H., Meinhold, P., Arnold, F.H.

(2012) J Biotechnol 164: 188-195

Released	2012-09-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Lactococcus lactis subsp. lactis KF147
Macromolecule	Alcohol dehydrogenase 1 (protein)
Unique Ligands	PG4, ZN

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4EQ6 \| pdb_00004eq6	Download File View File

The crystal structure of Psy3-Csm2 complex from budding yeast

She, Z., Gao, Z.Q., Dong, Y.H.

(2012) FEBS Lett 586: 2306-2312

Released	2012-08-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Chromosome segregation in meiosis protein 2 (protein) Platinum sensitivity protein 3 (protein)

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4F1R \| pdb_00004f1r	Download File View File

Structure analysis of the global metabolic regulator Crc from Pseudomonas aeruginos

Zhang, H., Wei, Y., Gao, Z.Q., Dong, Y.H.

(2013) IUBMB Life 65: 50-57

Released	2013-02-06
Method	X-RAY DIFFRACTION 2.201 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Catabolite repression control protein (protein)

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4HFF \| pdb_00004hff	Download File View File

Crystal structure of the type VI effector-immunity complex Tae4-Tai4 from Salmonella Typhimurium

Zhang, H., Gao, Z.Q., Dong, Y.H.

(2013) J Biological Chem 288: 5928-5939

Released	2013-01-16
Method	X-RAY DIFFRACTION 2.398 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Putative cytoplasmic protein (protein) Putative periplasmic protein (protein)

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4HFK \| pdb_00004hfk	Download File View File

Crystal structure of the type VI effector-immunity complex Tae4-Tai4 from Enterobacter cloacae

Zhang, H., Gao, Z.Q., Dong, Y.H.

(2013) J Biological Chem 288: 5928-5939

Released	2013-01-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Enterobacter cloacae subsp. cloacae ATCC 13047
Macromolecule	Putative cytoplasmic protein (protein) Putative uncharacterized protein (protein)
Unique Ligands	SO4

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4HFL \| pdb_00004hfl	Download File View File

Crystal structure of the type VI effector Tae4 from Enterobacter cloacae

Zhang, H., Gao, Z.Q., Dong, Y.H.

(2013) J Biological Chem 288: 5928-5939

Released	2013-01-16
Method	X-RAY DIFFRACTION 2.002 Å
Organisms	Enterobacter cloacae
Macromolecule	Putative cytoplasmic protein (protein)

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4INZ \| pdb_00004inz	Download File View File

The crystal structure of M145A mutant of an epoxide hydrolase from Bacillus megaterium

Kong, X.D., Zhou, J.H., Xu, J.H.

(2014) Proc Natl Acad Sci U S A 111: 15717-15722

Released	2014-02-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Priestia megaterium
Macromolecule	Soluble epoxide hydrolase (protein)
Unique Ligands	EDO, PEG

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4IO0 \| pdb_00004io0	Download File View File

Crystal structure of F128A mutant of an epoxide hydrolase from Bacillus megaterium complexed with its product (R)-3-[1]naphthyloxy-propane-1,2-diol

Kong, X.D., Zhou, J.H., Xu, J.H.

(2014) Proc Natl Acad Sci U S A 111: 15717-15722

Released	2014-02-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Priestia megaterium
Macromolecule	Soluble epoxide hydrolase (protein)
Unique Ligands	RN1, SO4

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4JUR \| pdb_00004jur	Download File View File

Crystal structure of the effector Tae4 from Salmonella typhimurium in complex with the immunity Tai4 from Enterobacter cloacae

Zhang, H., Gao, Z.Q., Dong, Y.H.

(2013) PLoS One 8: e73782-e73782

Released	2014-02-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Enterobacter cloacae subsp. cloacae ATCC 13047 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Putative cytoplasmic protein (protein) Uncharacterized protein (protein)

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4NZZ \| pdb_00004nzz	Download File View File

Crystal structure of epoxide hydrolase from bacillus megaterium

Kong, X.D., Zhou, J.H., Xu, J.H.

(2014) Proc Natl Acad Sci U S A 111: 15717-15722

Released	2014-10-29
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Priestia megaterium
Macromolecule	Soluble epoxide hydrolase (protein)

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4O08 \| pdb_00004o08	Download File View File

Crystal structure of bacillus megaterium epoxide hydrolase in complex with an inhibitor

Kong, X.D., Zhou, J.H., Xu, J.H.

(2014) Proc Natl Acad Sci U S A 111: 15717-15722

Released	2014-10-29
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Priestia megaterium
Macromolecule	Soluble epoxide hydrolase (protein)
Unique Ligands	PO6, SO4

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4O98 \| pdb_00004o98	Download File View File

Crystal structure of Pseudomonas oleovorans PoOPH mutant H250I/I263W

Luo, X.J., Kong, X.D., Zhao, J., Chen, Q., Zhou, J.H., Xu, J.H.

(2014) Biotechnol Bioeng 111: 1920-1930

Released	2014-12-03
Method	X-RAY DIFFRACTION 2.251 Å
Organisms	Ectopseudomonas oleovorans
Macromolecule	organophosphorus hydrolase (protein)
Unique Ligands	ZN

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4OB6 \| pdb_00004ob6	Download File View File

Complex structure of esterase rPPE S159A/W187H and substrate (S)-Ac-CPA

Dou, S., Kong, X.D., Ma, B.D., Chen, Q., Zhou, J.H., Xu, J.H.

(2014) Biochem Biophys Res Commun 446: 1145-1150

Released	2014-07-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pseudomonas sp. ECU1011
Macromolecule	Alpha/beta hydrolase fold-3 domain protein (protein)
Unique Ligands	S2T

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4OB7 \| pdb_00004ob7	Download File View File

Crystal structure of esterase rPPE mutant W187H

Dou, S., Kong, X.D., Ma, B.D., Xu, J.H., Zhou, J.H.

(2014) Biochem Biophys Res Commun 446: 1145-1150

Released	2014-07-23
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Pseudomonas sp. ECU1011
Macromolecule	Alpha/beta hydrolase fold-3 domain protein (protein)
Unique Ligands	MPD, PEG

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4OB8 \| pdb_00004ob8	Download File View File

Crystal structure of a novel thermostable esterase from Pseudomonas putida ECU1011

Dou, S., Kong, X.D., Ma, B.D., Xu, J.H., Zhou, J.H.

(2014) Biochem Biophys Res Commun 446: 1145-1150

Released	2014-07-23
Method	X-RAY DIFFRACTION 1.801 Å
Organisms	Pseudomonas sp. ECU1011
Macromolecule	Alpha/beta hydrolase fold-3 domain protein (protein)
Unique Ligands	MPD, PEG

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4OU4 \| pdb_00004ou4	Download File View File

Crystal structure of esterase rPPE mutant S159A complexed with (S)-Ac-CPA

Dou, S., Kong, X.D., Ma, B.D., Xu, J.H., Zhou, J.H.

(2014) Biochem Biophys Res Commun 446: 1145-1150

Released	2014-07-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pseudomonas sp. ECU1011
Macromolecule	Alpha/beta hydrolase fold-3 domain protein (protein)
Unique Ligands	S2T

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4OU5 \| pdb_00004ou5	Download File View File

Crystal structure of esterase rPPE mutant S159A/W187H

Dou, S., Kong, X.D., Ma, B.D., Xu, J.H., Zhou, J.H.

(2014) Biochem Biophys Res Commun 446: 1145-1150

Released	2014-07-23
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Pseudomonas sp. ECU1011
Macromolecule	Alpha/beta hydrolase fold-3 domain protein (protein)
Unique Ligands	MPD, PEG

1 to 25 of 90 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2HCU | pdb_00002hcu

3DEZ | pdb_00003dez

3Q6B | pdb_00003q6b

3TKA | pdb_00003tka

4DCM | pdb_00004dcm

4E0Q | pdb_00004e0q

4E8B | pdb_00004e8b

4EEX | pdb_00004eex

4EEZ | pdb_00004eez

4EQ6 | pdb_00004eq6

4F1R | pdb_00004f1r

4HFF | pdb_00004hff

4HFK | pdb_00004hfk

4HFL | pdb_00004hfl

4INZ | pdb_00004inz

4IO0 | pdb_00004io0

4JUR | pdb_00004jur

4NZZ | pdb_00004nzz

4O08 | pdb_00004o08

4O98 | pdb_00004o98

4OB6 | pdb_00004ob6

4OB7 | pdb_00004ob7

4OB8 | pdb_00004ob8

4OU4 | pdb_00004ou4

4OU5 | pdb_00004ou5