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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Seo, P.W."

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Search Summary

This query matches 22 Structures.

Refinements

Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

	Escherichia coli K-12 (4)
	Zymomonas mobilis subsp. mobilis ATCC 10988 (4)
	Mycobacterium tuberculosis variant bovis AF2122/97 (2)
	Vibrio vulnificus CMCP6 (2)
	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (2)
	uncultured bacterium (2)
	Deinococcus metallilatus (1)
	Enhygromyxa salina (1)
	Escherichia phage T7 (1)
	Parvibaculum lavamentivorans DS-1 (1)

More...

Taxonomy

	Bacteria (22)
	Duplodnaviria (1)

Experimental Method

X-RAY DIFFRACTION (22)

Polymer Entity Type

Protein (22)

Refinement Resolution (Å)

	1.5 - 2.0 (7)
	2.0 - 2.5 (11)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)

Release Date

	2015 - 2019 (9)
	2020 - 2024 (13)

Enzyme Classification Name

	Lyases (8)
	Oxidoreductases (5)
	Hydrolases (4)
	Ligases (2)
	Transferases (1)

Symmetry Type

	Asymmetric (9)
	Dihedral (8)
	Cyclic (6)

SCOP Classification

	Alpha and beta proteins (a/b) (4)
	Artifacts (1)

AllSelected

1 to 22 of 22 Structures

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5GUQ \| pdb_00005guq	Download File View File

Crystal structure of ASCH from Zymomonas mobilis

Ha, S.C., Park, S.Y., Kim, J.S.

(2017) Sci Rep 7: 12303-12303

Released	2017-08-30
Method	X-RAY DIFFRACTION 1.697 Å
Organisms	Zymomonas mobilis subsp. mobilis ATCC 10988
Macromolecule	Helix-turn-helix domain-containing protein (protein)

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5GUS \| pdb_00005gus	Download File View File

Crystal structure of ASCH domain from Zymomonas mobilis

Ha, S.C., Park, S.Y., Kim, J.S.

(2017) Sci Rep 7: 12303-12303

Released	2017-08-30
Method	X-RAY DIFFRACTION 1.951 Å
Organisms	Zymomonas mobilis subsp. mobilis ATCC 10988
Macromolecule	Helix-turn-helix domain-containing protein (protein)
Unique Ligands	CL, PE8, SO4

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5XSE \| pdb_00005xse	Download File View File

Crystal structure of the 2-keto-3-deoxy-6-phosphogluconate aldolase of Zymomonas mobilis ZM4

Seo, P.W., Kim, J.S.

To be published

Released	2018-06-20
Method	X-RAY DIFFRACTION 1.799 Å
Organisms	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
Macromolecule	KHG/KDPG aldolase (protein)

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5XSF \| pdb_00005xsf	Download File View File

Crystal structure of the 2-keto-3-deoxy-6-phosphogluconate aldolase of Zymomonas mobilis ZM4 with 3-phosphoglycerate

Seo, P.W., Kim, J.S.

To be published

Released	2018-06-20
Method	X-RAY DIFFRACTION 1.962 Å
Organisms	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
Macromolecule	KHG/KDPG aldolase (protein)
Unique Ligands	3PG, 3PY, PO4

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5Y6B \| pdb_00005y6b	Download File View File

Crystal structure of ZmASCH Y47F mutant protein from Zymomonas mobilis

Park, S.-Y., Kim, J.-S.

(2017) Sci Rep 7: 12303-12303

Released	2018-07-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Zymomonas mobilis subsp. mobilis ATCC 10988
Macromolecule	Helix-turn-helix domain-containing protein (protein)

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5Y6C \| pdb_00005y6c	Download File View File

Crystal structure of ZmASCH S128A mutant protein from Zymomonas mobilis

Park, S.-Y., Kim, J.-S.

(2017) Sci Rep 7: 12303-12303

Released	2018-07-18
Method	X-RAY DIFFRACTION 2.398 Å
Organisms	Zymomonas mobilis subsp. mobilis ATCC 10988
Macromolecule	Helix-turn-helix domain-containing protein (protein)
Unique Ligands	CL

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6J7H \| pdb_00006j7h	Download File View File

Crystal structure of blue fluorescent protein from metagenomic library

Seo, P.W., Kim, J.S.

(2019) J Mol Biology 431: 3191-3202

Released	2019-09-18
Method	X-RAY DIFFRACTION 2.309 Å
Organisms	uncultured bacterium
Macromolecule	Blue fluorescent protein (protein)

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6J7U \| pdb_00006j7u	Download File View File

Crystal structure of blue fluorescent protein from metagenomic library in complex with NADPH

Seo, P.W., Kim, J.S.

(2019) J Mol Biology 431: 3191-3202

Released	2019-09-18
Method	X-RAY DIFFRACTION 2.302 Å
Organisms	uncultured bacterium
Macromolecule	Blue fluorescent protein (protein)
Unique Ligands	NDP

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6JDK \| pdb_00006jdk	Download File View File

Crystal structure of Baeyer-Villiger monooxygenase from Parvibaculum lavamentivorans

Kim, J.-S., Nguyen, T.D.

(2019) Biochem Biophys Res Commun 512: 564-570

Released	2019-04-10
Method	X-RAY DIFFRACTION 2.495 Å
Organisms	Parvibaculum lavamentivorans DS-1
Macromolecule	Baeyer-Villiger monooxygenase (protein)
Unique Ligands	FAD, MG

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6KM9 \| pdb_00006km9	Download File View File

Crystal structure of SucA from Vibrio vulnificus

Seo, P.W., Kim, J.S.

(2020) Catal Sci Technol

Released	2020-08-05
Method	X-RAY DIFFRACTION 2.724 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	Oxoglutarate dehydrogenase (Succinyl-transferring), E1 component (protein)
Unique Ligands	CA, MG, P6G, TPP

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6KMA \| pdb_00006kma	Download File View File

Crystal structure of SucA with glycolaldehyde-1-13C from Vibrio vulnificus

Seo, P.W., Kim, J.S.

(2020) Catal Sci Technol

Released	2020-08-05
Method	X-RAY DIFFRACTION 2.282 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	Oxoglutarate dehydrogenase (Succinyl-transferring), E1 component (protein)
Unique Ligands	CA, DW3, MG, P6G, TPP

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7BVA \| pdb_00007bva	Download File View File

Crystal structure of UDP-N-acetylmuramic Acid L-alanine ligase (MurC) from Mycobacterium bovis

Seo, P.W., Kim, J.S.

(2021) Acta Crystallogr D Struct Biol 77: 618-627

Released	2020-04-22
Method	X-RAY DIFFRACTION 2.303 Å
Organisms	Mycobacterium tuberculosis variant bovis AF2122/97
Macromolecule	UDP-N-acetylmuramate--L-alanine ligase (protein)
Unique Ligands	ZN

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7BVB \| pdb_00007bvb	Download File View File

Crystal structure of UDP-N-acetylmuramic Acid L-alanine ligase (MurC) from Mycobacterium bovis in complex with UDP-N-acetylglucosamine

Seo, P.W., Kim, J.S.

(2021) Acta Crystallogr D Struct Biol 77: 618-627

Released	2020-04-22
Method	X-RAY DIFFRACTION 3.191 Å
Organisms	Mycobacterium tuberculosis variant bovis AF2122/97
Macromolecule	UDP-N-acetylmuramate--L-alanine ligase (protein)
Unique Ligands	UD1, ZN

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7CT6 \| pdb_00007ct6	Download File View File

Crystal structure of GCL from Deinococcus metallilatus

Kim, J.H., Kim, J.S.

(2022) Green Chem 1:

Released	2021-08-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Deinococcus metallilatus
Macromolecule	Glyoxylate carboligase (protein)

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7EEW \| pdb_00007eew	Download File View File

Crystal structure of the intact MTase from Vibrio vulnificus YJ016 in complex with the DNA-mimicking Ocr protein and the S-adenosyl-L-homocysteine (SAH)

Seo, P.W., Park, S.Y., Kim, J.S.

(2022) Int J Biol Macromol 208: 381-389

Released	2022-03-23
Method	X-RAY DIFFRACTION 2.896 Å
Organisms	Escherichia phage T7 Vibrio vulnificus YJ016
Macromolecule	Overcome classical restriction gp0.3 (protein) Type I restriction-modification system methyltransferase subunit (protein)
Unique Ligands	SAH

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7V8T \| pdb_00007v8t	Download File View File

Crystal structure of class II pyruvate aldolase from Pseudomonas aeruginosa.

Seo, P.W., Kim, J.S.

To be published

Released	2022-08-24
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (protein)
Unique Ligands	IOD, P6G

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7XZ3 \| pdb_00007xz3	Download File View File

Crystal structure of the Type I-B CRISPR-associated protein, Csh2 from Thermobaculum terrenum

Seo, P.W., Gu, D.H., Park, S.Y., Kim, J.S.

(2023) Biochim Biophys Acta Proteins Proteom 1871: 140900-140900

Released	2023-05-31
Method	X-RAY DIFFRACTION 1.889 Å
Organisms	Thermobaculum terrenum
Macromolecule	CRISPR-associated protein, Csh2 family (protein)

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8I01 \| pdb_00008i01	Download File View File

Crystal structure of Escherichia coli glyoxylate carboligase

Kim, J.H., Kim, J.S.

(2023) Int J Biol Macromol 253: 127674-127674

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Escherichia coli K-12
Macromolecule	Glyoxylate carboligase (protein)
Unique Ligands	FAD, MG, TPP, UQ0

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8I05 \| pdb_00008i05	Download File View File

Crystal structure of Escherichia coli glyoxylate carboligase double mutant

Kim, J.H., Kim, J.S.

(2023) Int J Biol Macromol 253: 127674-127674

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Escherichia coli K-12
Macromolecule	Glyoxylate carboligase (protein)
Unique Ligands	FAD, MG, TPP, UQ0

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8I07 \| pdb_00008i07	Download File View File

Crystal structure of Escherichia coli glyoxylate carboligase double mutant in complex with glycolaldehyde

Kim, J.H., Kim, J.S.

(2023) Int J Biol Macromol 253: 127674-127674

Released	2023-11-22
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Escherichia coli K-12
Macromolecule	Glyoxylate carboligase (protein)
Unique Ligands	DW3, FAD, MG, TPP, UQ1

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8I08 \| pdb_00008i08	Download File View File

Crystal structure of Escherichia coli glyoxylate carboligase quadruple mutant

Kim, J.H., Kim, J.S.

(2023) Int J Biol Macromol 253: 127674-127674

Released	2023-11-22
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Escherichia coli K-12
Macromolecule	Glyoxylate carboligase (protein)
Unique Ligands	FAD, MG, TPP, UQ0