RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Pernot, L."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 41 Structures.

Refinements

Structure Determination Methodology

experimental (41)

Scientific Name of Source Organism

	Human alphaherpesvirus 1 strain 17 (11)
	Gallus gallus (6)
	Aeromonas hydrophila (5)
	Citrobacter sedlakii (5)
	Pseudomonas aeruginosa (3)
	Neisseria meningitidis (2)
	Stenotrophomonas maltophilia (2)
	Streptococcus pneumoniae R6 (2)
	Bacillus licheniformis (1)
	Plasmodium falciparum K1 (1)

More...

Taxonomy

	Bacteria (22)
	Duplodnaviria (11)
	Eukaryota (8)

Experimental Method

X-RAY DIFFRACTION (41)

Polymer Entity Type

Protein (41)

Refinement Resolution (Å)

	1.5 - 2.0 (6)
	2.0 - 2.5 (24)
	2.5 - 3.0 (9)
	3.0 - 3.5 (1)
	4.0 - 4.5 (1)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (9)
	2005 - 2009 (9)
	2010 - 2014 (17)

Enzyme Classification Name

	Hydrolases (17)
	Transferases (16)
	Oxidoreductases (2)

Membrane Protein Annotation

mpstruc (3)

Symmetry Type

	Asymmetric (21)
	Cyclic (20)

SCOP Classification

	Multi-domain proteins (alpha and beta) (14)
	Alpha and beta proteins (a+b) (15)
	Alpha and beta proteins (a/b) (14)
	Membrane and cell surface proteins and peptides (5)
	All beta proteins (2)

AllSelected

1 to 25 of 41 Structures

Page 1 of 2

Sort by

Explore in 3D

1BHY \| pdb_00001bhy	Download File View File

LOW TEMPERATURE MIDDLE RESOLUTION STRUCTURE OF P64K FROM MASC DATA

Ramin, M., Shepard, W., Fourme, R., Kahn, R.

(1999) Acta Crystallogr D Biol Crystallogr 55: 157-167

Released	1998-11-04
Method	X-RAY DIFFRACTION 4.18 Å
Organisms	Neisseria meningitidis
Macromolecule	P64K (protein)
Unique Ligands	FAD

Explore in 3D

1C10 \| pdb_00001c10	Download File View File

CRYSTAL STRUCTURE OF HEW LYSOZYME UNDER PRESSURE OF XENON (8 BAR)

Prange, T., Schiltz, M., Pernot, L., Colloc'h, N., Longhi, S., Bourguet, W., Fourme, R.

(1998) Proteins 30: 61-73

Released	1999-07-22
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Gallus gallus
Macromolecule	PROTEIN (LYSOZYME) (protein)
Unique Ligands	CL, NA, XE

Explore in 3D

1C1M \| pdb_00001c1m	Download File View File

PORCINE ELASTASE UNDER XENON PRESSURE (8 BAR)

Prange, T., Schiltz, M., Pernot, L., Colloc'h, N., Longhi, S., Bourguet, W., Fourme, R.

(1998) Proteins 30: 61-73

Released	1999-07-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Sus scrofa
Macromolecule	PROTEIN (PORCINE ELASTASE) (protein)
Unique Ligands	CA, SO4, XE

Explore in 3D

1C3L \| pdb_00001c3l	Download File View File

SUBTILISIN-CARLSBERG COMPLEXED WITH XENON (8 BAR)

Prange, T., Schiltz, M., Pernot, L., Colloc'h, N., Longhi, S.

(1998) Proteins 30: 61-73

Released	1999-08-04
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Bacillus licheniformis
Macromolecule	SUBTILISIN-CARLSBERG (protein)
Unique Ligands	CA, FMT, XE

Explore in 3D

1DY6 \| pdb_00001dy6	Download File View File

Structure of the imipenem-hydrolyzing beta-lactamase SME-1

Sougakoff, W., L'Hermite, G., Billy, I., Guillet, V., Naas, T., Nordman, P., Jarlier, V., Delettre, J.

(2002) Acta Crystallogr D Biol Crystallogr 58: 267

Released	2001-01-26
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Serratia marcescens
Macromolecule	CARBAPENEM-HYDROLYSING BETA-LACTAMASE SME-1 (protein)

Explore in 3D

1H5X \| pdb_00001h5x	Download File View File

CRYSTAL STRUCTURE OF THE CLASS D BETA-LACTAMASE OXA-13 COMPLEXED WITH IMIPENEM

Mayer, C., Pernot, L., Sougakoff, W.

To be published

Released	2002-05-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	BETA-LACTAMASE (protein)
Unique Ligands	IM2, SO4

Explore in 3D

1H8Y \| pdb_00001h8y	Download File View File

Crystal structure of the class D beta-lactamase OXA-13 in complex with meropenem

Pernot, L., Frenois, F., Rybkine, T., L'Hermite, G., Petrella, S., Delettre, J., Jarlier, V., Collatz, E., Sougakoff, W.

(2001) J Mol Biology 310: 859

Released	2001-07-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	BETA-LACTAMASE (protein)
Unique Ligands	MER, SO4

Explore in 3D

1H8Z \| pdb_00001h8z	Download File View File

Crystal structure of the class D beta-lactamase OXA-13

Pernot, L., Frenois, F., Rybkine, T., L'Hermite, G., Petrella, S., Delettre, J., Jarlier, V., Collatz, E., Sougakoff, W.

(2001) J Mol Biology 310: 859

Released	2001-07-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	BETA-LACTAMASE (protein)
Unique Ligands	SO4

Explore in 3D

1N4O \| pdb_00001n4o	Download File View File

Crystal structure of the Class A beta-lactamase L2 from Stenotrophomonas maltophilia

Pernot, L., Petrella, S., Sougakoff, W.

To be published

Released	2003-11-01
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Stenotrophomonas maltophilia
Macromolecule	L2 beta-lactamase (protein)
Unique Ligands	SO4

Explore in 3D

1O7E \| pdb_00001o7e	Download File View File

Crystal structure of the class A beta-lactamse L2 from Stenotrophomonas maltophilia at 1.51 angstrom

Pernot, L., Petrella, S., Sougakoff, W.

To be published

Released	2004-02-26
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Stenotrophomonas maltophilia
Macromolecule	L2 BETA LACTAMASE (protein)
Unique Ligands	GOL, SO4

Explore in 3D

1OJT \| pdb_00001ojt	Download File View File

STRUCTURE OF DIHYDROLIPOAMIDE DEHYDROGENASE

Li De La Sierra, I., Prange, T., Pernot, L.

(1997) J Mol Biology 269: 129-141

Released	1997-10-15
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Neisseria meningitidis
Macromolecule	SURFACE PROTEIN (protein)
Unique Ligands	FAD

Explore in 3D

1PYY \| pdb_00001pyy	Download File View File

Double mutant PBP2x T338A/M339F from Streptococcus pneumoniae strain R6 at 2.4 A resolution

Chesnel, L., Pernot, L., Lemaire, D., Champelovier, D., Croize, J., Dideberg, O., Vernet, T., Zapun, A.

(2003) J Biological Chem 278: 44448-44456

Released	2003-09-30
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Streptococcus pneumoniae R6
Macromolecule	Penicillin-binding protein 2X (protein)
Unique Ligands	MPD, SO4
Unique branched monosaccharides	GLC, TRV

Explore in 3D

1QTK \| pdb_00001qtk	Download File View File

CRYSTAL STRUCTURE OF HEW LYSOZYME UNDER PRESSURE OF KRYPTON (55 BAR)

Prange, T., Schiltz, M., Pernot, L., Colloc'h, N., Longhi, S., Bourguet, W., Fourme, R.

(1998) Proteins 30: 61-73

Released	1999-07-06
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Gallus gallus
Macromolecule	LYSOZYME (protein)
Unique Ligands	CL, KR, NA

Explore in 3D

1RP5 \| pdb_00001rp5	Download File View File

PBP2x from Streptococcus pneumoniae strain 5259 with reduced susceptibility to beta-lactam antibiotics

Pernot, L., Chesnel, L., Legouellec, A., Croize, J., Vernet, T., Dideberg, O., Dessen, A.

(2004) J Biological Chem 279: 16463-16470

Released	2004-02-03
Method	X-RAY DIFFRACTION 3 Å
Organisms	Streptococcus pneumoniae
Macromolecule	penicillin-binding protein 2x (protein)
Unique Ligands	SO4

Explore in 3D

1XP4 \| pdb_00001xp4	Download File View File

Crystal structure of a peptidoglycan synthesis regulatory factor (PBP3) from Streptococcus pneumoniae

Morlot, C., Pernot, L., Le Gouellec, A., Di Guilmi, A.M., Vernet, T., Dideberg, O., Dessen, A.

(2005) J Biological Chem 280: 15984-15991

Released	2004-11-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Streptococcus pneumoniae R6
Macromolecule	D-alanyl-D-alanine carboxypeptidase (protein)
Unique Ligands	IOD, SO4

Explore in 3D

3BFC \| pdb_00003bfc	Download File View File

class A beta-lactamase SED-G238C complexed with imipenem

Pernot, L., Petrella, S., Sougakoff, W.

To be published

Released	2007-12-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Citrobacter sedlakii
Macromolecule	Class A beta-lactamase Sed1 (protein)
Unique Ligands	IM2

Explore in 3D

3BFD \| pdb_00003bfd	Download File View File

Crystal Structure of the Class A beta-lactamase SED-G238C mutant from Citrobacter sedlakii

Pernot, L., Petrella, S., Sougakoff, W.

To be published

Released	2007-12-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Citrobacter sedlakii
Macromolecule	Class A beta-lactamase Sed1 (protein)
Unique Ligands	CAC

Explore in 3D

3BFE \| pdb_00003bfe	Download File View File

Crystal Structure of the Class A beta-lactamase SED-1 from Citrobacter sedlakii

Pernot, L., Petrella, S., Sougakoff, W.

To be published

Released	2007-12-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Citrobacter sedlakii
Macromolecule	Class A beta-lactamase Sed1 (protein)
Unique Ligands	SCN

Explore in 3D

3BFF \| pdb_00003bff	Download File View File

class A beta-lactamase SED-G238C complexed with faropenem

Pernot, L., Petrella, S., Sougakoff, W.

To be published

Released	2007-12-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Citrobacter sedlakii
Macromolecule	Class A beta-lactamase Sed1 (protein)
Unique Ligands	FPM, SCN, SFR

Explore in 3D

3BFG \| pdb_00003bfg	Download File View File

class A beta-lactamase SED-G238C complexed with meropenem

Pernot, L., Petrella, S., Sougakoff, W.

To be published

Released	2007-12-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Citrobacter sedlakii
Macromolecule	Class A beta-lactamase Sed1 (protein)
Unique Ligands	MER

Explore in 3D

3C0M \| pdb_00003c0m	Download File View File

Crystal structure of the proaerolysin mutant Y221G

Pernot, L., Schiltz, M., Thurnheer, S., Burr, S.E., van der Goot, G.

(2013) Nat Chem Biol 9: 623-629

Released	2008-02-12
Method	X-RAY DIFFRACTION 2.88 Å
Organisms	Aeromonas hydrophila
Macromolecule	Aerolysin (protein)

Explore in 3D

3C0N \| pdb_00003c0n	Download File View File

Crystal structure of the proaerolysin mutant Y221G at 2.2 A

Pernot, L., Schiltz, M., Thurnheer, S., Burr, S.E., van der Goot, G.

(2013) Nat Chem Biol 9: 623-629

Released	2008-02-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Aeromonas hydrophila
Macromolecule	Aerolysin (protein)

Explore in 3D

3C0O \| pdb_00003c0o	Download File View File

Crystal structure of the proaerolysin mutant Y221G complexed with mannose-6-phosphate

Pernot, L., Schiltz, M., Thurnheer, S., Burr, S.E., van der Goot, G.

(2013) Nat Chem Biol 9: 623-629

Released	2008-02-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Aeromonas hydrophila
Macromolecule	Aerolysin (protein)
Unique Ligands	ACT, M6P

Explore in 3D

3F0T \| pdb_00003f0t	Download File View File

Crystal structure of thymidine kinase from Herpes simplex virus type 1 in complex with N-methyl-DHBT

Pernot, L., Perozzo, R., Westermaier, Y., Martic, M., Ametamey, S., Scapozza, L.

(2011) Nucleosides Nucleotides Nucleic Acids 30: 293-315

Released	2009-11-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human alphaherpesvirus 1 strain 17
Macromolecule	Thymidine kinase (protein)
Unique Ligands	NCV, SO4