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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Overall, C.M."

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Search Summary

This query matches 40 Structures.

Refinements

Structure Determination Methodology

experimental (40)

Scientific Name of Source Organism

	Homo sapiens (29)
	Severe acute respiratory syndrome coronavirus 2 (10)
	Hepatitis B virus (4)
	Micromonospora okii (4)
	Arabidopsis thaliana (1)
	Lysobacter enzymogenes (1)
	Saccharomyces cerevisiae (1)

Taxonomy

	Eukaryota (31)
	Riboviria (14)
	Bacteria (5)

Experimental Method

	X-RAY DIFFRACTION (26)
	ELECTRON MICROSCOPY (10)
	SOLUTION NMR (4)

Polymer Entity Type

Protein (40)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (7)
	2.0 - 2.5 (10)
	2.5 - 3.0 (8)
	3.0 - 3.5 (1)
	3.5 - 4.0 (2)
	4.0 - 4.5 (3)
	> 4.5 (4)

Release Date

	1995 - 1999 (1)
	2005 - 2009 (1)
	2015 - 2019 (10)
	2020 - 2024 (28)

Enzyme Classification Name

	Transferases (13)
	Hydrolases (3)

Symmetry Type

	Asymmetric (34)
	Cyclic (6)

SCOP Classification

	All alpha proteins (5)
	Artifacts (3)
	All beta proteins (1)

AllSelected

1 to 25 of 40 Structures

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1BOQ \| pdb_00001boq	Download File View File

PRO REGION C-TERMINUS: PROTEASE ACTIVE SITE INTERACTIONS ARE CRITICAL IN CATALYZING THE FOLDING OF ALPHA-LYTIC PROTEASE

Peters, R.J., Shiau, A.K., Sohl, J.L., Anderson, D.E., Tang, G., Silen, J.L., Agard, D.A.

(1998) Biochemistry 37: 12058-12067

Released	1998-08-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Lysobacter enzymogenes
Macromolecule	PROTEIN (ALPHA-LYTIC PROTEASE) (protein)
Unique Ligands	SO4

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2MY5 \| pdb_00002my5	Download File View File

Solution Structure of KstB-PCP in kosinostatin biosynthesis

Zhao, B., Lan, W., Wang, C., Tang, G., Cao, C.

To be published

Released	2016-01-20
Method	SOLUTION NMR
Organisms	Micromonospora okii
Macromolecule	Peptidyl carrier protein (protein)
Unique Ligands	PN7

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2MY6 \| pdb_00002my6	Download File View File

Structure of KstB-PCP(apo)

Zhao, B., Lan, W., Wang, C., Tang, G., Cao, C.

To be published

Released	2016-01-20
Method	SOLUTION NMR
Organisms	Micromonospora okii
Macromolecule	Peptidyl carrier protein (protein)

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3FZE \| pdb_00003fze	Download File View File

Structure of the 'minimal scaffold' (ms) domain of Ste5 that cocatalyzes Fus3 phosphorylation by Ste7

Good, M.C., Tang, G., Singleton, J., Remenyi, A., Lim, W.A.

(2009) Cell 136: 1085-1097

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.601 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Protein STE5 (protein)

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5GMZ \| pdb_00005gmz	Download File View File

Hepatitis B virus core protein Y132A mutant in complex with 4-methyl heteroaryldihydropyrimidine

Xu, Z.H., Zhou, Z.

(2016) J Med Chem 59: 7651-7666

Released	2016-08-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Hepatitis B virus
Macromolecule	Core protein (protein)
Unique Ligands	6XU, CL, GOL, IPA

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5T2P \| pdb_00005t2p	Download File View File

Hepatitis B virus core protein Y132A mutant in complex with sulfamoylbenzamide (SBA_R01)

Zhou, Z., Xu, Z.H.

(2017) Sci Rep 7: 42374-42374

Released	2017-02-22
Method	X-RAY DIFFRACTION 1.693 Å
Organisms	Hepatitis B virus
Macromolecule	Core protein (protein)
Unique Ligands	CL, DMS, GOL, IPA, K89

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5V5F \| pdb_00005v5f	Download File View File

Crystal structure of RICE1 (PNT2)

Li, P.

(2017) Elife 6:

Released	2017-09-13
Method	X-RAY DIFFRACTION 2.945 Å
Organisms	Arabidopsis thaliana
Macromolecule	At3g11770 (protein)

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5WPX \| pdb_00005wpx	Download File View File

Solution Structure of KstB-PCP loaded with nicotinic acid in kosinostatin biosynthesis

Zhao, B., Lan, W., Tang, G., Cao, C.

To be published

Released	2018-02-07
Method	SOLUTION NMR
Organisms	Micromonospora okii
Macromolecule	Peptidyl carrier protein (protein)
Unique Ligands	7V9

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5WPY \| pdb_00005wpy	Download File View File

Solution Structure of KstB-PCP loaded with nicotinic acid in kosinostatin biosynthesis

Zhao, B., Lan, W., Tang, G., Cao, C.

To be published

Released	2017-11-29
Method	SOLUTION NMR
Organisms	Micromonospora okii
Macromolecule	Peptidyl carrier protein (protein)
Unique Ligands	PN7

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5WQA \| pdb_00005wqa	Download File View File

Crystal structure of PDE4D catalytic domain complexed with Selaginpulvilins K

Huang, Y., Zhang, T., Zheng, X., Yin, S., Luo, H.B.

(2017) Biochem Pharmacol 130: 51-59

Released	2017-02-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (protein)
Unique Ligands	J20, MG, ZN

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5WRE \| pdb_00005wre	Download File View File

Hepatitis B virus core protein Y132A mutant in complex with heteroaryldihydropyrimidine (HAP_R01)

Zhou, Z., Xu, Z.H.

(2017) Sci Rep 7: 42374-42374

Released	2017-02-22
Method	X-RAY DIFFRACTION 1.946 Å
Organisms	Hepatitis B virus
Macromolecule	Core protein (protein)
Unique Ligands	7TL, CL, GOL, IPA

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5WTW \| pdb_00005wtw	Download File View File

Hepatitis B virus core protein Y132A mutant in P 41 21 2 Space Group

Zhou, Z., Xu, Z.H.

(2017) Sci Rep 7: 42374-42374

Released	2017-02-22
Method	X-RAY DIFFRACTION 2.623 Å
Organisms	Hepatitis B virus
Macromolecule	Core protein (protein)
Unique Ligands	CL

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6W7F \| pdb_00006w7f	Download File View File

Structure of EED bound to inhibitor 5285

Petrunak, E.M., Stuckey, J.A.

(2020) J Med Chem 63: 7252-7267

Released	2020-07-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Polycomb protein EED (protein)
Unique Ligands	GOL, Q3D

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6W7G \| pdb_00006w7g	Download File View File

Structure of EED bound to inhibitor 1056

Petrunak, E.M., Stuckey, J.A.

(2020) J Med Chem 63: 7252-7267

Released	2020-07-08
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Polycomb protein EED (protein)
Unique Ligands	FMT, NA, Q3A

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7CC2 \| pdb_00007cc2	Download File View File

Strategic design of catalytic lysine-targeting reversible covalent BCR-ABL Inhibitors

Anantharajan, J., Baburajendran, N.

(2021) Angew Chem Int Ed Engl 60: 17131-17137

Released	2021-06-09
Method	X-RAY DIFFRACTION 2.723 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase ABL1 (protein)
Unique Ligands	FVC

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7DT2 \| pdb_00007dt2	Download File View File

Strategic design of catalytic lysine-targeting reversible covalent BCR-ABL Inhibitors

Anantharajan, J., Baburajendran, N.

(2021) Angew Chem Int Ed Engl 60: 17131-17137

Released	2021-06-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase ABL1 (protein)
Unique Ligands	HJ9

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7MSB \| pdb_00007msb	Download File View File

Structure of EED bound to EEDi-4259

Petrunak, E., Stuckey, J.

(2021) J Med Chem 64: 14540-14556

Released	2021-10-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Polycomb protein EED (protein)
Unique Ligands	ZNG

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7MSD \| pdb_00007msd	Download File View File

Structure of EED bound to EEDi-6068

Petrunak, E., Stuckey, J.

(2021) J Med Chem 64: 14540-14556

Released	2021-10-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Polycomb protein EED (protein)
Unique Ligands	FMT, ZMY

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7W7X \| pdb_00007w7x	Download File View File

The crystal structure of human abl1 kinase domain in complex with ABL1-A11

Zhu, C., Zhang, Z.M.

(2022) Angew Chem Int Ed Engl 61: e202203878-e202203878

Released	2022-04-27
Method	X-RAY DIFFRACTION 2.00000937681 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase ABL1 (protein)
Unique Ligands	8DW

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7W7Y \| pdb_00007w7y	Download File View File

The crystal structure of human abl1 kinase domain in complex with ABL2-A5

Zhu, C., Zhang, Z.M.

(2022) Angew Chem Int Ed Engl 61: e202203878-e202203878

Released	2022-04-27
Method	X-RAY DIFFRACTION 2.20003021871 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase ABL1 (protein)
Unique Ligands	8IW

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8H7B \| pdb_00008h7b	Download File View File

The crystal structure of human mcl1 kinase domain in complex with MCL1-M-EBA

Zhu, C.J., Zhang, Z.M.

(2023) J Am Chem Soc

Released	2023-02-22
Method	X-RAY DIFFRACTION 1.4640844632 Å
Organisms	Homo sapiens
Macromolecule	Induced myeloid leukemia cell differentiation protein Mcl-1 (protein)
Unique Ligands	QHR

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8H7F \| pdb_00008h7f	Download File View File

The crystal structure of human abl1 kinase domain in complex with abl1-B-EBA

Zhu, C.J., Zhang, Z.M.

(2023) J Am Chem Soc

Released	2023-03-01
Method	X-RAY DIFFRACTION 2.4501342407 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase ABL1 (protein)
Unique Ligands	QEW

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8H7H \| pdb_00008h7h	Download File View File

The crystal structure of human abl1 kinase domain in complex with abl1-A-EBA

Zhu, C.J., Zhang, Z.M.

(2023) J Am Chem Soc

Released	2023-03-22
Method	X-RAY DIFFRACTION 2.27789711576 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase ABL1 (protein)
Unique Ligands	QH9

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8HC2 \| pdb_00008hc2	Download File View File

SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with 1 YB9-258 Fab (1 RBD up)

Liu, B., Gao, X., Chen, Q., Li, Z., Su, M., He, J., Xiong, X.

(2023) Nat Commun 14: 1058-1058

Released	2023-01-25
Method	ELECTRON MICROSCOPY 6.21 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of YB9-258 Fab (protein) Light chain of YB9-258 Fab (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8HC3 \| pdb_00008hc3	Download File View File

SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with 2 YB9-258 Fabs (2 RBD up)

Liu, B., Gao, X., Chen, Q., Li, Z., Su, M., He, J., Xiong, X.

(2023) Nat Commun 14: 1058-1058

Released	2023-01-25
Method	ELECTRON MICROSCOPY 4.35 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of YB9-258 (protein) Light chain of YB9-258 (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

1 to 25 of 40 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1BOQ | pdb_00001boq

2MY5 | pdb_00002my5

2MY6 | pdb_00002my6

3FZE | pdb_00003fze

5GMZ | pdb_00005gmz

5T2P | pdb_00005t2p

5V5F | pdb_00005v5f

5WPX | pdb_00005wpx

5WPY | pdb_00005wpy

5WQA | pdb_00005wqa

5WRE | pdb_00005wre

5WTW | pdb_00005wtw

6W7F | pdb_00006w7f

6W7G | pdb_00006w7g

7CC2 | pdb_00007cc2

7DT2 | pdb_00007dt2

7MSB | pdb_00007msb

7MSD | pdb_00007msd

7W7X | pdb_00007w7x

7W7Y | pdb_00007w7y

8H7B | pdb_00008h7b

8H7F | pdb_00008h7f

8H7H | pdb_00008h7h

8HC2 | pdb_00008hc2

8HC3 | pdb_00008hc3