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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Nicholas, R.A."

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Search Summary

This query matches 43 Structures.

Refinements

Structure Determination Methodology

experimental (43)

Scientific Name of Source Organism

	Neisseria gonorrhoeae (20)
	Escherichia coli (7)
	Mycobacterium tuberculosis (4)
	Escherichia coli K-12 (3)
	Neisseria gonorrhoeae FA 1090 (2)
	Pseudomonas aeruginosa (2)
	Aquifex aeolicus (1)
	Escherichia coli IHE3034 (1)
	Homo sapiens (1)
	Mycobacterium tuberculosis H37Rv (1)

More...

Taxonomy

	Bacteria (42)
	Eukaryota (1)

Experimental Method

X-RAY DIFFRACTION (43)

Polymer Entity Type

Protein (43)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (19)
	2.0 - 2.5 (20)
	2.5 - 3.0 (2)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (8)
	2010 - 2014 (12)
	2015 - 2019 (6)
	2020 - 2024 (13)

Enzyme Classification Name

Hydrolases (42)

Symmetry Type

	Asymmetric (43)
	Cyclic (1)

SCOP Classification

	Multi-domain proteins (alpha and beta) (26)
	Artifacts (13)
	All beta proteins (12)
	Alpha and beta proteins (a+b) (4)

AllSelected

1 to 25 of 43 Structures

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1HD8 \| pdb_00001hd8	Download File View File

Crystal structure of a deacylation-defective mutant of penicillin-binding protein 5 at 2.3 A resolution

Davies, C., White, S.W., Nicholas, R.A.

(2001) J Biological Chem 276: 616

Released	2001-11-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	PENICILLIN-BINDING PROTEIN 5 (protein)

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1NJ4 \| pdb_00001nj4	Download File View File

Crystal structure of a deacylation-defective mutant of penicillin-binding protein 5 at 1.9 A resolution

Nicola, G., Nicholas, R.A., Davies, C.

(2003) J Biological Chem 278: 52826-52833

Released	2003-01-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	Penicillin-binding protein 5 (protein)

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1NZO \| pdb_00001nzo	Download File View File

The crystal structure of wild type penicillin-binding protein 5 from E. coli

Nicholas, R.A., Krings, S., Tomberg, J., Nicola, G., Davies, C.

(2003) J Biological Chem 278: 52826-52833

Released	2004-01-13
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Escherichia coli
Macromolecule	Penicillin-binding protein 5 (protein)
Unique Ligands	BME

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1NZU \| pdb_00001nzu	Download File View File

Wild-type penicillin-binding protein 5 from E. coli modified by beta-mercaptoethanol

Nicola, G., Nicholas, R.A., Davies, C.

(2005) Biochem J 392: 55-63

Released	2004-03-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Penicillin-binding protein 5 (protein)
Unique Ligands	BME

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1SDN \| pdb_00001sdn	Download File View File

CRYSTAL STRUCTURE OF A DEACYLATION-DEFECTIVE MUTANT OF PENICILLIN-BINDING PROTEIN 5 MODIFIED BY MERCURY

Nicola, G., Nicholas, R.A., Davies, C.

(2005) Biochem J 392: 55-63

Released	2005-02-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	Penicillin-binding protein 5 (protein)
Unique Ligands	HG

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1Z6F \| pdb_00001z6f	Download File View File

Crystal structure of penicillin-binding protein 5 from E. coli in complex with a boronic acid inhibitor

Nicola, G., Peddi, S., Stefanova, M., Nicholas, R.A., Gutheil, W.G., Davies, C.

(2005) Biochemistry 44: 8207-8217

Released	2005-06-21
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	Penicillin-binding protein 5 (protein)
Unique Ligands	BO9, GOL

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2G5D \| pdb_00002g5d	Download File View File

Crystal structure of MltA from Neisseria gonorrhoeae Monoclinic form

Davies, C.

(2006) J Mol Biology 359: 122-136

Released	2006-03-21
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Neisseria gonorrhoeae FA 1090
Macromolecule	GNA33 (protein)

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2G6G \| pdb_00002g6g	Download File View File

Crystal structure of MltA from Neisseria gonorrhoeae

Powell, A.J., Liu, Z.J., Nicholas, R.A., Davies, C.

(2006) J Mol Biology 359: 122-136

Released	2006-05-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Neisseria gonorrhoeae FA 1090
Macromolecule	GNA33 (protein)
Unique Ligands	GOL, SO4

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2GAE \| pdb_00002gae	Download File View File

Crystal structure of MltA from E. coli

Powell, A.J., Liu, Z.J., Nicholas, R.A., Davies, C.

(2006) J Mol Biology 359: 122-136

Released	2006-05-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	Membrane-bound lytic murein transglycosylase A (protein)

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2GK2 \| pdb_00002gk2	Download File View File

Crystal structure of the N terminal domain of human CEACAM1

Fedarovich, A., Tomberg, J., Nicholas, R.A., Davies, C.

(2006) Acta Crystallogr D Biol Crystallogr 62: 971-979

Released	2006-09-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Carcinoembryonic antigen-related cell adhesion molecule 1 (protein)
Unique Ligands	GOL, NI

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3EQU \| pdb_00003equ	Download File View File

Crystal structure of penicillin-binding protein 2 from Neisseria gonorrhoeae

Powell, A.J., Deacon, A.M., Nicholas, R.A., Davies, C.

(2009) J Biological Chem 284: 1202-1212

Released	2008-10-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	Penicillin-binding protein 2 (protein)
Unique Ligands	GOL, SO4

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3EQV \| pdb_00003eqv	Download File View File

Crystal structure of penicillin-binding protein 2 from Neisseria gonorrhoeae containing four mutations associated with penicillin resistance

Powell, A.J., Deacon, A.M., Nicholas, R.A., Davies, C.

(2009) J Biological Chem 284: 1202-1212

Released	2008-10-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	Penicillin-binding protein 2 (protein)
Unique Ligands	GOL, SO4

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3LO7 \| pdb_00003lo7	Download File View File

Crystal structure of PBPA from Mycobacterium tuberculosis

Fedarovich, A., Davies, C.

(2010) J Mol Biology 398: 54-65

Released	2010-03-23
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Penicillin-binding protein A (protein)

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3MZD \| pdb_00003mzd	Download File View File

Structure of penicillin-binding protein 5 from E. coli: cloxacillin acyl-enzyme complex

Nicola, G., Tomberg, J., Pratt, R.F., Nicholas, R.A., Davies, C.

(2010) Biochemistry 49: 8094-8104

Released	2011-03-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12
Macromolecule	D-alanyl-D-alanine carboxypeptidase dacA (protein)
Unique Ligands	CXV, GOL

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3MZE \| pdb_00003mze	Download File View File

Structure of penicillin-binding protein 5 from E.coli: cefoxitin acyl-enzyme complex

Nicola, G., Tomberg, J., Pratt, R.F., Nicholas, R.A., Davies, C.

(2010) Biochemistry 49: 8094-8104

Released	2011-03-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	D-alanyl-D-alanine carboxypeptidase dacA (protein)
Unique Ligands	1QL, GOL

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3MZF \| pdb_00003mzf	Download File View File

Structure of penicillin-binding protein 5 from E. coli: imipenem acyl-enzyme complex

Nicola, G., Tomberg, J., Pratt, R.F., Nicholas, R.A., Davies, C.

(2010) Biochemistry 49: 8094-8104

Released	2011-03-16
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli K-12
Macromolecule	D-alanyl-D-alanine carboxypeptidase dacA (protein)
Unique Ligands	GOL, IM2

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3P3C \| pdb_00003p3c	Download File View File

Crystal Structure of the Aquifex aeolicus LpxC/LPC-009 complex

Lee, C.-J., Zhou, P.

(2011) Chem Biol 18: 38-47

Released	2011-01-05
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Aquifex aeolicus
Macromolecule	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (protein)
Unique Ligands	3P3, PO4, ZN

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3P3E \| pdb_00003p3e	Download File View File

Crystal Structure of the PSEUDOMONAS AERUGINOSA LpxC/LPC-009 complex

Lee, C.-J., Zhou, P.

(2011) Chem Biol 18: 38-47

Released	2011-01-05
Method	X-RAY DIFFRACTION 1.28 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (protein)
Unique Ligands	3P3, NA, NO3, ZN

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3P3G \| pdb_00003p3g	Download File View File

Crystal Structure of the Escherichia coli LpxC/LPC-009 complex

Lee, C.-J., Zhou, P.

(2011) Chem Biol 18: 38-47

Released	2011-01-05
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli IHE3034
Macromolecule	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (protein)
Unique Ligands	3P3, DMS, SO4, UKW, ZN

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3UN7 \| pdb_00003un7	Download File View File

Crystal structure of PBPA from MYCOBACTERIUM TUBERCULOSIS

Fedarovich, A., Davies, C.

(2012) J Mol Biology 418: 316-330

Released	2012-10-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Penicillin-binding protein A (protein)

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3UPN \| pdb_00003upn	Download File View File

Structure of penicillin-binding protein A from M. tuberculosis: imipenem acyl-enzyme complex

Davies, C., Fedorovich, A.

(2012) J Mol Biology 418: 316-330

Released	2012-10-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Penicillin-binding protein A (protein)
Unique Ligands	IM2

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3UPO \| pdb_00003upo	Download File View File

Structure of penicillin-binding protein A from M. tuberculosis: penicillin G acyl-enzyme complex

Davies, C., Fedorovich, A.

(2012) J Mol Biology 418: 316-330

Released	2012-10-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Penicillin-binding protein A (protein)
Unique Ligands	PNM

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3UPP \| pdb_00003upp	Download File View File

Structure of penicillin-binding protein A from M. tuberculosis: ceftrixaone acyl-enzyme complex

Davies, C., Fedorovich, A.

(2012) J Mol Biology 418: 316-330

Released	2012-10-24
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Penicillin-binding protein A (protein)
Unique Ligands	CEF

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4U3T \| pdb_00004u3t	Download File View File

Crystal structure of the transpeptidase domain of Neisseria gonorrhoeae penicillin-binding protein 2 derived from the penicillin-resistant strain 6140

Fedarovich, A., Davies, C.

(2014) Biochemistry 53: 7596-7603

Released	2014-12-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Neisseria gonorrhoeae FA6140
Macromolecule	Penicillin-binding protein 2 (protein)

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5KSH \| pdb_00005ksh	Download File View File

Crystal structure of penicillin-binding protein 2 from Neisseria gonorrhoeae containing an A501T mutation associated with cephalosporin resistance

Fedarovich, A., Davies, C.

(2017) Biochemistry 56: 1140-1150

Released	2017-03-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	Penicillin-binding protein 2 (protein)
Unique Ligands	GOL, SO4

1 to 25 of 43 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1HD8 | pdb_00001hd8

1NJ4 | pdb_00001nj4

1NZO | pdb_00001nzo

1NZU | pdb_00001nzu

1SDN | pdb_00001sdn

1Z6F | pdb_00001z6f

2G5D | pdb_00002g5d

2G6G | pdb_00002g6g

2GAE | pdb_00002gae

2GK2 | pdb_00002gk2

3EQU | pdb_00003equ

3EQV | pdb_00003eqv

3LO7 | pdb_00003lo7

3MZD | pdb_00003mzd

3MZE | pdb_00003mze

3MZF | pdb_00003mzf

3P3C | pdb_00003p3c

3P3E | pdb_00003p3e

3P3G | pdb_00003p3g

3UN7 | pdb_00003un7

3UPN | pdb_00003upn

3UPO | pdb_00003upo

3UPP | pdb_00003upp

4U3T | pdb_00004u3t

5KSH | pdb_00005ksh