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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Nagai, K."

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Search Summary

This query matches 71 Structures.

Refinements

Structure Determination Methodology

experimental (71)

Scientific Name of Source Organism

	Homo sapiens (30)
	Saccharomyces cerevisiae (16)
	Flavobacterium sp. KI723T1 (7)
	Drosophila melanogaster (4)
	Saccharomyces cerevisiae S288C (4)
	Arthrobacter (3)
	Human adenovirus 2 (3)
	Mus musculus (2)
	Agromyces sp. KY5R (1)
	Arthrobacter sp. (1)

More...

Taxonomy

	Eukaryota (57)
	Bacteria (12)
	Varidnaviria (3)
	Archaea (2)

Experimental Method

	X-RAY DIFFRACTION (45)
	ELECTRON MICROSCOPY (16)
	SOLUTION NMR (10)

Polymer Entity Type

	Protein (70)
	RNA (26)

Refinement Resolution (Å)

	1.0 - 1.5 (8)
	1.5 - 2.0 (14)
	2.0 - 2.5 (10)
	2.5 - 3.0 (7)
	3.0 - 3.5 (8)
	3.5 - 4.0 (8)
	4.0 - 4.5 (3)
	> 4.5 (3)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (7)
	2000 - 2004 (17)
	2005 - 2009 (7)
	2010 - 2014 (8)
	2015 - 2019 (26)
	2020 - 2024 (5)

Enzyme Classification Name

	Hydrolases (29)
	Oxidoreductases (1)
	Transferases (7)
	Isomerases (2)
	Ligases (2)
	Translocases (1)

Membrane Protein Annotation

	MemProtMD (1)
	PDBTM (1)
	OPM (2)

Symmetry Type

	Asymmetric (51)
	Cyclic (12)
	Dihedral (7)

SCOP Classification

	All alpha proteins (16)
	Alpha and beta proteins (a+b) (12)
	All beta proteins (4)
	Alpha and beta proteins (a/b) (4)
	Peptides (4)
	Artifacts (4)
	Small proteins (4)
	Multi-domain proteins (alpha and beta) (2)

AllSelected

1 to 25 of 71 Structures

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1A9N \| pdb_00001a9n	Download File View File

CRYSTAL STRUCTURE OF THE SPLICEOSOMAL U2B''-U2A' PROTEIN COMPLEX BOUND TO A FRAGMENT OF U2 SMALL NUCLEAR RNA

Price, S.R., Evans, P.R., Nagai, K.

(1998) Nature 394: 645-650

Released	1998-09-23
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Homo sapiens
Macromolecule	SPLICEOSOMAL U2B'' (protein) U2A' (protein) RNA (5'-R(CPCPUPGPGPUPAPUPUPGPCPAPGPUPAPCPCPUPCPCPAPGP* GP*U)-3') (nucleic acid)

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1ABW \| pdb_00001abw	Download File View File

DEOXY RHB1.1 (RECOMBINANT HEMOGLOBIN)

Kundrot, C.E., Kroeger, K.S.

(1997) Structure 5: 227-237

Released	1998-06-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	HEMOGLOBIN-BASED BLOOD SUBSTITUTE (protein)
Unique Ligands	HEM, LEU, MET

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1AUD \| pdb_00001aud	Download File View File

U1A-UTRRNA, NMR, 31 STRUCTURES

Allain, F.H.-T., Gubser, C.C., Howe, P.W.A., Nagai, K., Neuhaus, D., Varani, G.

(1997) EMBO J 16: 5764-5774

Released	1998-02-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	U1A 102 (protein) RNA 3UTR (nucleic acid)

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1B34 \| pdb_00001b34	Download File View File

CRYSTAL STRUCTURE OF THE D1D2 SUB-COMPLEX FROM THE HUMAN SNRNP CORE DOMAIN

Walke, S., Young, R.J., Kambach, C., Avis, J.M., De La Fortelle, E., Li, J., Nagai, K.

(1999) Cell 96: 375-387

Released	2000-01-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1) (protein) PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2) (protein)

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1C7B \| pdb_00001c7b	Download File View File

DEOXY RHB1.0 (RECOMBINANT HEMOGLOBIN)

Brucker, E.A.

(2000) Acta Crystallogr D Biol Crystallogr 56: 812-816

Released	2000-06-30
Method	X-RAY DIFFRACTION 1.803 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (DEOXYHEMOGLOBIN (ALPHA CHAIN)) (protein) PROTEIN (DEOXYHEMOGLOBIN (BETA CHAIN)) (protein)
Unique Ligands	HEM

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1C7C \| pdb_00001c7c	Download File View File

DEOXY RHB1.1 (RECOMBINANT HEMOGLOBIN)

Brucker, E.A.

(2000) Acta Crystallogr D Biol Crystallogr 56: 812-816

Released	2000-06-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (DEOXYHEMOGLOBIN (ALPHA CHAIN)) (protein) PROTEIN (DEOXYHEMOGLOBIN (BETA CHAIN)) (protein)
Unique Ligands	HEM

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1C7D \| pdb_00001c7d	Download File View File

DEOXY RHB1.2 (RECOMBINANT HEMOGLOBIN)

Brucker, E.A.

(2000) Acta Crystallogr D Biol Crystallogr 56: 812-816

Released	2000-06-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (DEOXYHEMOGLOBIN (ALPHA CHAIN)) (protein) PROTEIN (DEOXYHEMOGLOBIN (BETA CHAIN)) (protein)
Unique Ligands	HEM

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1D3B \| pdb_00001d3b	Download File View File

CRYSTAL STRUCTURE OF THE D3B SUBCOMPLEX OF THE HUMAN CORE SNRNP DOMAIN AT 2.0A RESOLUTION

Kambach, C., Walke, S., Avis, J.M., De La Fortelle, E., Li, J., Nagai, K.

(1999) Cell 96: 375-387

Released	1999-12-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B) (protein) PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3) (protein)
Unique Ligands	CIT, GOL

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1DUH \| pdb_00001duh	Download File View File

CRYSTAL STRUCTURE OF THE CONSERVED DOMAIN IV OF E. COLI 4.5S RNA

Jovine, L., Hainzl, T., Oubridge, C., Scott, W.G., Li, J., Sixma, T.K., Wonacott, A., Skarzynski, T., Nagai, K.

(2000) Structure 8: 527-540

Released	2000-05-08
Method	X-RAY DIFFRACTION 2.7 Å
Macromolecule	4.5S RNA DOMAIN IV (nucleic acid)
Unique Ligands	LU, MG, SO4

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1FHT \| pdb_00001fht	Download File View File

RNA-BINDING DOMAIN OF THE U1A SPLICEOSOMAL PROTEIN U1A117, NMR, 43 STRUCTURES

Allain, F.H.-T., Gubser, C.C., Howe, P.W.A., Nagai, K., Neuhaus, D., Varani, G.

(1996) J Mol Biology 257: 398-411

Released	1996-07-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A (protein)

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1L9A \| pdb_00001l9a	Download File View File

CRYSTAL STRUCTURE OF SRP19 IN COMPLEX WITH THE S DOMAIN OF SIGNAL RECOGNITION PARTICLE RNA

Oubridge, C., Kuglstatter, A., Jovine, L., Nagai, K.

(2002) Mol Cell 9: 1251-1261

Released	2002-06-28
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN (protein) signal recognition particle RNA S domain (nucleic acid)
Unique Ligands	MG, MMC

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1MFQ \| pdb_00001mfq	Download File View File

Crystal Structure Analysis of a Ternary S-Domain Complex of Human Signal Recognition Particle

Kuglstatter, A., Oubridge, C., Nagai, K.

(2002) Nat Struct Biol 9: 740-744

Released	2002-09-20
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	signal recognition particle 19kDa protein (protein) signal recognition particle 54kDa protein (protein) 7S RNA of human SRP (nucleic acid)
Unique Ligands	CL, MG

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1O1I \| pdb_00001o1i	Download File View File

Cyanomet hemoglobin (A-GLY-C:V1M,L29F,H58Q; B,D:V1M,L106W)

Brucker, E.A.

Released	2002-12-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Hemoglobin Alpha chain (protein) Hemoglobin Beta chain (protein)
Unique Ligands	CYN, HEM

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1O1J \| pdb_00001o1j	Download File View File

Deoxy hemoglobin (A-GLY-C:V1M,L29F,H58Q; B,D:V1M,L106W)

Brucker, E.A.

Released	2002-12-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Hemoglobin Alpha chain (protein) Hemoglobin Beta chain (protein)
Unique Ligands	HEM

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1O1K \| pdb_00001o1k	Download File View File

Deoxy hemoglobin (A,C:V1M; B,D:V1M,V67W)

Brucker, E.A.

Released	2002-12-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Hemoglobin Alpha chain (protein) Hemoglobin Beta chain (protein)
Unique Ligands	HEM

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1O1L \| pdb_00001o1l	Download File View File

Deoxy hemoglobin (A-GLY-C:V1M,L29W,H58Q; B,D:V1M)

Brucker, E.A.

Released	2002-12-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Hemoglobin Alpha chain (protein) Hemoglobin Beta chain (protein)
Unique Ligands	HEM

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1O1M \| pdb_00001o1m	Download File View File

Deoxy hemoglobin (A-GLYGLYGLY-C:V1M,L29F,H58Q B,D:V1M,V67W)

Brucker, E.A.

Released	2002-12-18
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Hemoglobin Alpha chain (protein) Hemoglobin Beta chain (protein)
Unique Ligands	HEM

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1O1N \| pdb_00001o1n	Download File View File

Deoxy hemoglobin (A-GLYGLYGLY-C:V1M,L29W; B,D:V1M)

Brucker, E.A.

Released	2002-12-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Hemoglobin Alpha chain (protein) Hemoglobin beta chain (protein)
Unique Ligands	HEM

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1O1O \| pdb_00001o1o	Download File View File

Deoxy hemoglobin (A,C:V1M,V62L; B,D:V1M,V67L)

Brucker, E.A.

Released	2002-12-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Hemoglobin Alpha chain (protein) Hemoglobin beta chain (protein)
Unique Ligands	HEM

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1O1P \| pdb_00001o1p	Download File View File

Deoxy hemoglobin (A-GLY-C:V1M; B,D:V1M,C93A,N108K)

Brucker, E.A.

Released	2002-12-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Hemoglobin Alpha chain (protein) Hemoglobin beta chain (protein)
Unique Ligands	HEM

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1OIA \| pdb_00001oia	Download File View File

U1A rnp domain 1-95

Nagai, K., Evans, P.R.

(1990) Nature 348: 515

Released	2003-06-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A (protein)

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1SXL \| pdb_00001sxl	Download File View File

RESONANCE ASSIGNMENTS AND SOLUTION STRUCTURE OF THE SECOND RNA-BINDING DOMAIN OF SEX-LETHAL DETERMINED BY MULTIDIMENSIONAL HETERONUCLEAR MAGNETIC RESONANCE SPECTROSCOPY

Lee, A.L., Kanaar, R., Rio, D.C., Wemmer, D.E.

(1994) Biochemistry 33: 13775-13786

Released	1994-09-30
Method	SOLUTION NMR
Organisms	Drosophila melanogaster
Macromolecule	SEX-LETHAL PROTEIN PROTEIN (protein)

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1URN \| pdb_00001urn	Download File View File

U1A MUTANT/RNA COMPLEX + GLYCEROL

Oubridge, C., Ito, N., Evans, P.R., Teo, C.-H., Nagai, K.

(1994) Nature 372: 432-438

Released	1996-03-08
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (U1A) (protein) RNA (5'-R(APAPUPCPCPAPUPUPGPCPAPCPUPCPCPGPG PAPUPUP*U)-3') (nucleic acid)
Unique Ligands	CL, GOL