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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Fuentes-Prior, P."

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Search Summary

This query matches 46 Structures.

Refinements

Structure Determination Methodology

experimental (46)

Scientific Name of Source Organism

	Homo sapiens (38)
	unidentified (6)
	Bos taurus (4)
	Bacillus sp. MN-32 (3)
	Staphylococcus aureus (3)
	Anopheles albimanus (2)
	synthetic construct (2)
	Bacillus subtilis (1)
	Haemadipsa sylvestris (1)
	Meccus pallidipennis (1)

More...

Taxonomy

	Eukaryota (42)
	Bacteria (7)
	unclassified sequences (6)
	other sequences (2)

Experimental Method

X-RAY DIFFRACTION (46)

Polymer Entity Type

Protein (46)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (8)
	2.0 - 2.5 (17)
	2.5 - 3.0 (12)
	3.0 - 3.5 (5)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (15)
	2005 - 2009 (2)
	2010 - 2014 (4)
	2015 - 2019 (2)
	2020 - 2024 (19)

Enzyme Classification Name

	Hydrolases (22)
	Ligases (1)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (36)
	Cyclic (10)

SCOP Classification

	All beta proteins (13)
	Small proteins (4)
	Alpha and beta proteins (a/b) (5)
	All alpha proteins (3)
	Artifacts (1)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 46 Structures

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1AVG \| pdb_00001avg	Download File View File

THROMBIN INHIBITOR FROM TRIATOMA PALLIDIPENNIS

Fuentes-Prior, P., Huber, R., Bode, W.

(1997) Proc Natl Acad Sci U S A 94: 11845-11850

Released	1998-12-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus Meccus pallidipennis
Macromolecule	THROMBIN (protein) TRIABIN (protein)

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1CZS \| pdb_00001czs	Download File View File

CRYSTAL STRUCTURE OF THE C2 DOMAIN OF HUMAN COAGULATION FACTOR V: COMPLEX WITH PHENYLMERCURY

Macedo-Ribeiro, S., Bode, W., Huber, R., Kane, W.H., Fuentes-Prior, P.

(1999) Nature 402: 434-439

Released	1999-11-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (COAGULATION FACTOR V) (protein)
Unique Ligands	PHG

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1CZT \| pdb_00001czt	Download File View File

CRYSTAL STRUCTURE OF THE C2 DOMAIN OF HUMAN COAGULATION FACTOR V

Macedo-Ribeiro, S., Bode, W., Huber, R., Kane, W.H., Fuentes-Prior, P.

(1999) Nature 402: 434-439

Released	1999-11-26
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (COAGULATION FACTOR V) (protein)

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1CZV \| pdb_00001czv	Download File View File

CRYSTAL STRUCTURE OF THE C2 DOMAIN OF HUMAN COAGULATION FACTOR V: DIMERIC CRYSTAL FORM

Macedo-Ribeiro, S., Bode, W., Huber, R., Kane, W.H., Fuentes-Prior, P.

(1999) Nature 402: 434-439

Released	1999-11-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (COAGULATION FACTOR V) (protein)

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1DX5 \| pdb_00001dx5	Download File View File

Crystal structure of the thrombin-thrombomodulin complex

Fuentes-Prior, P., Iwanaga, Y., Huber, R., Pagila, R., Rumennik, G., Seto, M., Morser, J., Light, D.R., Bode, W.

(2000) Nature 404: 518

Released	2000-04-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Thrombin heavy chain (protein) Thrombin light chain (protein) Thrombomodulin (protein)
Unique Ligands	0GJ, CA, FMT, NA, NAG

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1E0F \| pdb_00001e0f	Download File View File

Crystal structure of the human alpha-thrombin-haemadin complex: an exosite II-binding inhibitor

Richardson, J.L., Kroeger, B., Hoefken, W., Pereira, P., Huber, R., Bode, W., Fuentes-Prior, P.

(2000) EMBO J 19: 5650

Released	2000-11-03
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Haemadipsa sylvestris Homo sapiens
Macromolecule	HAEMADIN (protein) THROMBIN (protein)

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1EAW \| pdb_00001eaw	Download File View File

Crystal structure of the MTSP1 (matriptase)-BPTI (aprotinin) complex

Friedrich, R., Bode, W.

(2002) J Biological Chem 277: 2160

Released	2002-01-28
Method	X-RAY DIFFRACTION 2.93 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	PANCREATIC TRYPSIN INHIBITOR (protein) SUPPRESSOR OF TUMORIGENICITY 14 (protein)

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1EAX \| pdb_00001eax	Download File View File

Crystal structure of MTSP1 (matriptase)

Friedrich, R., Bode, W.

(2002) J Biological Chem 277: 2160

Released	2002-01-28
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	SUPPRESSOR OF TUMORIGENICITY 14 (protein)
Unique Ligands	BEN, SO4

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1FQ3 \| pdb_00001fq3	Download File View File

CRYSTAL STRUCTURE OF HUMAN GRANZYME B

Estebanez-Perpina, E., Fuentes-Prior, P., Belorgey, D., Rubin, H., Bode, W.

(2000) Biol Chem 381: 1203-1214

Released	2001-01-31
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	GRANZYME B (protein)
Unique Ligands	SO4
Unique branched monosaccharides	BMA, NAG

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1GQF \| pdb_00001gqf	Download File View File

Crystal structure of human procaspase-7

Riedl, S., Bode, W., Fuentes-Prior, P.

(2001) Proc Natl Acad Sci U S A 98: 14790-14795

Released	2002-01-04
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Caspase-7 (protein)
Unique Ligands	SO4

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1GT9 \| pdb_00001gt9	Download File View File

High resolution crystal structure of a thermostable serine-carboxyl type proteinase, kumamolisin (kscp)

Comellas-Bigler, M., Fuentes-Prior, P., Maskos, K., Huber, R., Oyama, H., Uchida, K., Dunn, B.M., Oda, K., Bode, W.

(2002) Structure 10: 865

Released	2002-06-13
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Bacillus subtilis
Macromolecule	KUMAMOLYSIN (protein)
Unique Ligands	CA, SO4

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1GTG \| pdb_00001gtg	Download File View File

Crystal structure of the thermostable serine-carboxyl type proteinase, kumamolysin (kscp)

Comellas-Bigler, M., Fuentes-Prior, P., Maskos, K., Huber, R., Oyama, H., Uchida, K., Dunn, B.M., Oda, K., Bode, W.

(2002) Structure 10: 865

Released	2002-06-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus sp. MN-32
Macromolecule	KUMAMOLYSIN (protein)
Unique Ligands	CA

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1GTJ \| pdb_00001gtj	Download File View File

Crystal structure of the thermostable serine-carboxyl type proteinase, kumamolisin (KSCP) - complex with Ac-Ile-Ala-Phe-cho

Comellas-Bigler, M., Fuentes-Prior, P., Maskos, K., Huber, R., Oyama, H., Uchida, K., Dunn, B.M., Oda, K., Bode, W.

(2002) Structure 10: 865

Released	2002-06-13
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Bacillus sp. MN-32 synthetic construct
Macromolecule	ALDEHYDE INHIBITOR (protein) KUMAMOLYSIN (protein)
Unique Ligands	CA, SO4

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1GTL \| pdb_00001gtl	Download File View File

The thermostable serine-carboxyl type proteinase, kumamolisin (KSCP) - complex with Ac-Ile-Pro-Phe-cho

Comellas-Bigler, M., Fuentes-Prior, P., Maskos, K., Huber, R., Oyama, H., Uchida, K., Dunn, B.M., Oda, K., Bode, W.

(2002) Structure 10: 865

Released	2002-06-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bacillus sp. MN-32 synthetic construct
Macromolecule	ALDEHYDE INHIBITOR (protein) KUMAMOLYSIN (protein)
Unique Ligands	CA, SO4

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1JC9 \| pdb_00001jc9	Download File View File

TACHYLECTIN 5A FROM TACHYPLEUS TRIDENTATUS (JAPANESE HORSESHOE CRAB)

Kairies, N., Beisel, H.-G., Fuentes-Prior, P., Tsuda, R., Muta, T., Iwanaga, S., Bode, W., Huber, R., Kawabata, S.

(2001) Proc Natl Acad Sci U S A 98: 13519-13524

Released	2001-11-28
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Tachypleus tridentatus
Macromolecule	techylectin-5A (protein)
Unique Ligands	CA, NAG

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1MZA \| pdb_00001mza	Download File View File

crystal structure of human pro-granzyme K

Hink-Schauer, C., Estebanez-Perpina, E., Wilharm, E., Fuentes-Prior, P., Klinkert, W., Bode, W., Jenne, D.E.

(2002) J Biological Chem 277: 50923-50933

Released	2003-01-14
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Homo sapiens
Macromolecule	pro-granzyme K (protein)

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1MZD \| pdb_00001mzd	Download File View File

crystal structure of human pro-granzyme K

Hink-Schauer, C., Estebanez-Perpina, E., Wilharm, E., Fuentes-Prior, P., Klinkert, W., Bode, W., Jenne, D.E.

(2002) J Biological Chem 277: 50923-50933

Released	2003-01-14
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	pro-granzyme K (protein)

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1NU7 \| pdb_00001nu7	Download File View File

Staphylocoagulase-Thrombin Complex

Friedrich, R., Bode, W., Fuentes-Prior, P., Panizzi, P., Bock, P.E.

(2003) Nature 425: 535-539

Released	2003-10-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Staphylococcus aureus
Macromolecule	Staphylocoagulase (protein) Thrombin heavy chain (protein) Thrombin light chain (protein)
Unique Ligands	0ZJ, HG, IMD

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1NU9 \| pdb_00001nu9	Download File View File

Staphylocoagulase-Prethrombin-2 complex

Friedrich, R., Bode, W., Fuentes-Prior, P., Panizzi, P., Bock, P.E.

(2003) Nature 425: 535-539

Released	2003-10-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Staphylococcus aureus
Macromolecule	Staphylocoagulase (protein) Thrombin light and heavy chains (protein)
Unique Ligands	0ZJ, HG, IMD

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2A1D \| pdb_00002a1d	Download File View File

Staphylocoagulase bound to bovine thrombin

Friedrich, R., Panizzi, P., Kawabata, S., Bode, W., Bock, P.E., Fuentes-Prior, P.

(2006) J Biological Chem 281: 1188-1195

Released	2005-09-27
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Bos taurus Staphylococcus aureus
Macromolecule	Staphylocoagulase (protein) thrombin (protein)
Unique Ligands	0G6, NA, NAG

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2ODY \| pdb_00002ody	Download File View File

Thrombin-bound boophilin displays a functional and accessible reactive-site loop

Macedo-Ribeiro, S., Fuentes-Prior, P., Pereira, P.J.B.

(2008) PLoS One 3: e1624-e1624

Released	2008-01-22
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Bos taurus Rhipicephalus microplus
Macromolecule	Boophilin (protein) Prothrombin (EC 3.4.21.5) (protein)
Unique Ligands	NA, NAG, PO4

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3P6Z \| pdb_00003p6z	Download File View File

Structural basis of thrombin mediated factor V activation: essential role of the hirudin-like sequence Glu666-Glu672 for processing at the heavy chain-B domain junction

Corral-Rodriguez, M.A., Bock, P.E., Hernandez-Carvajal, E., Gutierrez-Gallego, R., Fuentes-Prior, P.

(2011) Blood 117: 7164-7173

Released	2011-06-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor V (protein) Thrombin heavy chain (protein) Thrombin light chain (protein)
Unique Ligands	0G6, CL, MPD, NA, NAG

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3P70 \| pdb_00003p70	Download File View File

Structural basis of thrombin-mediated factor V activation: essential role of the hirudin-like sequence Glu666-Glu672 for processing at the heavy chain-B domain junction

Corral-Rodriguez, M.A., Bock, P.E., Hernandez-Carvajal, E., Gutierrez-Gallego, R., Fuentes-Prior, P.

(2011) Blood 117: 7164-7173

Released	2011-09-28
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	HUMAN ALPHA-THROMBIN, HEAVY CHAIN (protein) HUMAN ALPHA-THROMBIN, LIGHT CHAIN (protein) HUMAN FACTOR V, A2-B DOMAIN LINKER (protein)
Unique Ligands	BEN, BGC, NA, NAG
Unique branched monosaccharides	NAG

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4E05 \| pdb_00004e05	Download File View File

Anophelin from the malaria vector inhibits thrombin through a novel reverse-binding mechanism

Figueiredo, A.C., de Sanctis, D., Gutierrez-Gallego, R., Cereija, T.B., Macedo-Ribeiro, S., Fuentes-Prior, P., Pereira, P.J.B.

(2012) Proc Natl Acad Sci U S A 109: E3649-E3658

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.304 Å
Organisms	Anopheles albimanus Homo sapiens
Macromolecule	Salivary anti-thrombin peptide anophelin (protein) Thrombin (protein)
Unique Ligands	NA, NAG

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4E06 \| pdb_00004e06	Download File View File

Anophelin from the malaria vector inhibits thrombin through a novel reverse-binding mechanism

Figueiredo, A.C., de Sanctis, D., Gutierrez-Gallego, R., Cereija, T.B., Macedo-Ribeiro, S., Fuentes-Prior, P., Pereira, P.J.B.

(2012) Proc Natl Acad Sci U S A 109: E3649-E3658

Released	2012-12-05
Method	X-RAY DIFFRACTION 3.196 Å
Organisms	Anopheles albimanus Homo sapiens
Macromolecule	Salivary anti-thrombin peptide anophelin (protein) Thrombin (protein)
Unique Ligands	NA, NAG

1 to 25 of 46 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AVG | pdb_00001avg

1CZS | pdb_00001czs

1CZT | pdb_00001czt

1CZV | pdb_00001czv

1DX5 | pdb_00001dx5

1E0F | pdb_00001e0f

1EAW | pdb_00001eaw

1EAX | pdb_00001eax

1FQ3 | pdb_00001fq3

1GQF | pdb_00001gqf

1GT9 | pdb_00001gt9

1GTG | pdb_00001gtg

1GTJ | pdb_00001gtj

1GTL | pdb_00001gtl

1JC9 | pdb_00001jc9

1MZA | pdb_00001mza

1MZD | pdb_00001mzd

1NU7 | pdb_00001nu7

1NU9 | pdb_00001nu9

2A1D | pdb_00002a1d

2ODY | pdb_00002ody

3P6Z | pdb_00003p6z

3P70 | pdb_00003p70

4E05 | pdb_00004e05

4E06 | pdb_00004e06