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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Wong, B."

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Search Summary

This query matches 170 Structures.

Refinements

Structure Determination Methodology

experimental (170)

Scientific Name of Source Organism

	Homo sapiens (66)
	synthetic construct (9)
	Klebsiella oxytoca (8)
	Thermus thermophilus HB8 (7)
	Chlamydomonas reinhardtii (6)
	Gallus gallus (6)
	Bacillus subtilis (5)
	Escherichia coli (4)
	Hebeloma cylindrosporum (4)
	Mycobacterium tuberculosis H37Rv (4)

More...

Taxonomy

	Eukaryota (101)
	Bacteria (62)
	other sequences (9)
	Archaea (5)
	Riboviria (3)
	Duplodnaviria (2)
	Varidnaviria (1)

Experimental Method

X-RAY DIFFRACTION (170)

Polymer Entity Type

	Protein (170)
	DNA (7)
	RNA (2)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (16)
	1.5 - 2.0 (82)
	2.0 - 2.5 (49)
	2.5 - 3.0 (22)

Release Date

	2000 - 2004 (13)
	2005 - 2009 (20)
	2010 - 2014 (45)
	2015 - 2019 (66)
	2020 - 2024 (25)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (43)
	Lyases (15)
	Oxidoreductases (19)
	Transferases (20)
	Isomerases (4)
	Ligases (1)

Membrane Protein Annotation

	MemProtMD (2)
	PDBTM (2)
	mpstruc (2)
	OPM (1)

Symmetry Type

	Asymmetric (90)
	Cyclic (74)
	Dihedral (8)

SCOP Classification

	Alpha and beta proteins (a+b) (44)
	All alpha proteins (40)
	Alpha and beta proteins (a/b) (29)
	All beta proteins (11)
	Artifacts (22)
	Multi-domain proteins (alpha and beta) (1)
	Small proteins (1)

AllSelected

1 to 25 of 170 Structures

Page 1 of 7

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1DIO \| pdb_00001dio	Download File View File

DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA

Shibata, N., Masuda, J., Tobimatsu, T., Toraya, T., Suto, K., Morimoto, Y., Yasuoka, N.

(1999) Structure 7: 997-1008

Released	2000-01-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Klebsiella oxytoca
Macromolecule	PROTEIN (DIOL DEHYDRATASE) (protein)
Unique Ligands	B12, K, PGO

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1DS1 \| pdb_00001ds1	Download File View File

CRYSTAL STRUCTURE OF CLAVAMINATE SYNTHASE IN COMPLEX WITH FE(II) AND 2-OXOGLUTARATE

Zhang, Z.H., Ren, J., Stammers, D.K., Baldwin, J.E., Harlos, K., Schofield, C.J.

(2000) Nat Struct Biol 7: 127-133

Released	2000-07-06
Method	X-RAY DIFFRACTION 1.08 Å
Organisms	Streptomyces clavuligerus
Macromolecule	CLAVAMINATE SYNTHASE 1 (protein)
Unique Ligands	AKG, FE2, PGO, SO4

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1EEX \| pdb_00001eex	Download File View File

CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA

Shibata, N., Masuda, J., Toraya, T., Morimoto, Y., Yasuoka, N.

(2000) Structure 8: 775-788

Released	2001-02-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Klebsiella oxytoca
Macromolecule	PROPANEDIOL DEHYDRATASE (protein)
Unique Ligands	COY, K, PGO

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1EGM \| pdb_00001egm	Download File View File

CRYSTAL STRUCTURE OF DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX AT 100K.

Masuda, J., Shibata, N., Toraya, T., Morimoto, Y., Yasuoka, N.

(2000) Structure 8: 775-788

Released	2000-09-20
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Klebsiella oxytoca
Macromolecule	PROPANEDIOL DEHYDRATASE (protein)
Unique Ligands	CNC, K, PGO

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1EGV \| pdb_00001egv	Download File View File

CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSELLA OXYTOCA UNDER THE ILLUMINATED CONDITION.

Masuda, J., Shibata, N., Toraya, T., Morimoto, Y., Yasuoka, N.

(2000) Structure 8: 775-788

Released	2001-02-21
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Klebsiella oxytoca
Macromolecule	PROPANEDIOL DEHYDRATASE (protein)
Unique Ligands	COY, K, PGO

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1EVU \| pdb_00001evu	Download File View File

HUMAN FACTOR XIII WITH CALCIUM BOUND IN THE ION SITE

Garzon, R.J., Pratt, K.P., Bishop, P.D., Le Trong, I., Stenkamp, R.E., Teller, D.C.

To be published

Released	2000-05-10
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	COAGULATION FACTOR XIII (protein)
Unique Ligands	CA, PGO

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1EX0 \| pdb_00001ex0	Download File View File

HUMAN FACTOR XIII, MUTANT W279F ZYMOGEN

Garzon, R.J., Pratt, K.P., Bishop, P.D., Le Trong, I., Stenkamp, R.E., Teller, D.C.

To be published

Released	2003-12-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	COAGULATION FACTOR XIII A CHAIN (protein)
Unique Ligands	CA, PGO, PO4

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1HHY \| pdb_00001hhy	Download File View File

Deglucobalhimycin in complex with D-Ala-D-Ala

Lehmann, C., Bunkoczi, G., Sheldrick, G.M., Vertesy, L.

(2002) J Mol Biology 318: 723

Released	2003-09-05
Method	X-RAY DIFFRACTION 0.89 Å
Organisms	Amycolatopsis sp.
Macromolecule	DEGLUCOBALHIMYCIN (protein)
Unique Ligands	DAL, DVC, NA, PGO

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1HQS \| pdb_00001hqs	Download File View File

CRYSTAL STRUCTURE OF ISOCITRATE DEHYDROGENASE FROM BACILLUS SUBTILIS

Singh, S.K., Matsuno, K., LaPorte, D.C., Banaszak, L.J.

(2001) J Biological Chem 276: 26154-26163

Released	2001-07-25
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Bacillus subtilis
Macromolecule	ISOCITRATE DEHYDROGENASE (protein)
Unique Ligands	CIT, PGO, PGR

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1IWP \| pdb_00001iwp	Download File View File

Glycerol Dehydratase-cyanocobalamin Complex of Klebsiella pneumoniae

Yamanishi, M., Yunoki, M., Tobimatsu, T., Toraya, T.

(2002) Eur J Biochem 269: 4484-4494

Released	2002-10-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Glycerol Dehydratase Alpha subunit (protein) Glycerol Dehydratase Beta subunit (protein) Glycerol Dehydratase Gamma subunit (protein)
Unique Ligands	B12, K, PGO

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1K6E \| pdb_00001k6e	Download File View File

COMPLEX OF HYDROLYTIC HALOALKANE DEHALOGENASE LINB FROM SPHINGOMONAS PAUCIMOBILIS UT26 WITH 1,2-PROPANEDIOL (PRODUCT OF DEHALOGENATION OF 1,2-DIBROMOPROPANE) AT 1.85A

Streltsov, V.A., Prokop, Z., Damborsky, J., Nagata, Y., Oakley, A., Wilce, M.C.J.

(2003) Biochemistry 42: 10104-10112

Released	2003-08-19
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Sphingomonas paucimobilis
Macromolecule	HALOALKANE DEHALOGENASE (protein)
Unique Ligands	1BP, BR, CL, MG, PGO

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1RRM \| pdb_00001rrm	Download File View File

Crystal Structure of Lactaldehyde reductase

Kumaran, D., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2004-08-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	Lactaldehyde reductase (protein)
Unique Ligands	APR, FE2, PGO, ZN

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1UC4 \| pdb_00001uc4	Download File View File

Structure of diol dehydratase complexed with (S)-1,2-propanediol

Shibata, N., Nakanishi, Y., Fukuoka, M., Yamanishi, M., Yasuoka, N., Toraya, T.

(2003) J Biological Chem 278: 22717-22725

Released	2003-07-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Klebsiella oxytoca
Macromolecule	diol dehydrase alpha subunit (protein) diol dehydrase beta subunit (protein) diol dehydrase gamma subunit (protein)
Unique Ligands	CNC, K, NH4, PGO

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1WOM \| pdb_00001wom	Download File View File

Crystal structure of RsbQ

Kaneko, T., Kumasaka, T., Tanaka, N.

(2005) Protein Sci 14: 558-565

Released	2005-02-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus subtilis
Macromolecule	Sigma factor sigB regulation protein rsbQ (protein)
Unique Ligands	MLA, PGO

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2E7Y \| pdb_00002e7y	Download File View File

High resolution structure of T. maritima tRNase Z

Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2007) Acta Crystallogr Sect F Struct Biol Cryst Commun 63: 637-641

Released	2007-09-11
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Thermotoga maritima
Macromolecule	tRNase Z (protein)
Unique Ligands	PGO, SO4, ZN

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2EWG \| pdb_00002ewg	Download File View File

T. brucei Farnesyl Diphosphate Synthase Complexed with Minodronate

Cao, R., Mao, J., Gao, Y., Robinson, H., Odeh, S., Goddard, A., Oldfield, E.

(2006) J Am Chem Soc 128: 14485-14497

Released	2006-10-31
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Trypanosoma brucei
Macromolecule	farnesyl pyrophosphate synthase (protein)
Unique Ligands	M0N, MG, PGO

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2IZR \| pdb_00002izr	Download File View File

Structure of casein kinase gamma 3 in complex with inhibitor

Bunkoczi, G., Salah, E., Rellos, P., Das, S., Fedorov, O., Savitsky, P., Debreczeni, J.E., Gileadi, O., Sundstrom, M., Edwards, A., Arrowsmith, C., Weigelt, J., von Delft, F., Knapp, S.

To be published

Released	2006-08-01
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	CASEIN KINASE I ISOFORM GAMMA-3 (protein)
Unique Ligands	BRK, CL, MG, PGO

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2IZS \| pdb_00002izs	Download File View File

Structure of casein kinase gamma 3 in complex with inhibitor

Bunkoczi, G., Salah, E., Rellos, P., Das, S., Fedorov, O., Savitsky, P., Debreczeni, J.E., Gileadi, O., Sundstrom, M., Edwards, A., Arrowsmith, C., Weigelt, J., von Delft, F., Knapp, S.

To be published

Released	2006-08-01
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	CASEIN KINASE I ISOFORM GAMMA-3 (protein)
Unique Ligands	BRQ, CL, MG, PGO

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2J1P \| pdb_00002j1p	Download File View File

Geranylgeranyl diphosphate synthase from Sinapis alba in complex with GGPP

Kloer, D.P., Welsch, R., Beyer, P., Schulz, G.E.

(2006) Biochemistry 45: 15197

Released	2007-01-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sinapis alba
Macromolecule	GERANYLGERANYL PYROPHOSPHATE SYNTHETASE (protein)
Unique Ligands	BME, GRG, PGO

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2ODV \| pdb_00002odv	Download File View File

Crystal structure of a fragment of the plakin domain of plectin, Cys to Ala mutant.

de Pereda, J.M.

(2007) J Mol Biology 368: 1379-1391

Released	2007-03-13
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Plectin 1 (protein)
Unique Ligands	PGO

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2OIF \| pdb_00002oif	Download File View File

The crystal structure of ferric cyanide bound barley hexacoordinate hemoglobin.

Hoy, J.A.

(2007) J Mol Biology 371: 168-179

Released	2007-07-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Hordeum vulgare
Macromolecule	Non-legume hemoglobin (protein)
Unique Ligands	CYN, HEM, PGO

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2RIL \| pdb_00002ril	Download File View File

Crystal structure of a putative monooxygenase (YP_001095275.1) from Shewanella loihica PV-4 at 1.26 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2007-10-23
Method	X-RAY DIFFRACTION 1.26 Å
Organisms	Shewanella loihica PV-4
Macromolecule	Antibiotic biosynthesis monooxygenase (protein)
Unique Ligands	ACT, CL, PGO

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2V9L \| pdb_00002v9l	Download File View File

L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT Q6Y- E192A)

Grueninger, D., Schulz, G.E.

(2008) Science 319: 206

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.23 Å
Organisms	Escherichia coli
Macromolecule	RHAMNULOSE-1-PHOSPHATE ALDOLASE (protein)
Unique Ligands	ACT, PGO, PO4, ZN

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2V9N \| pdb_00002v9n	Download File View File

L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT A88F- E192A)

Grueninger, D., Schulz, G.E.

(2008) Science 319: 206-209

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Escherichia coli
Macromolecule	RHAMNULOSE-1-PHOSPHATE ALDOLASE (protein)
Unique Ligands	CIT, GOL, PGO, PO4, ZN

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2VZ6 \| pdb_00002vz6	Download File View File

Structure of human calcium calmodulin dependent protein kinase type II alpha (CAMK2A) in complex with Indirubin E804

Pike, A.C.W., Rellos, P., King, O., Salah, E., Parizotto, E., Fedorov, O., Shrestha, L., Burgess-Brown, N., Roos, A., Murray, J.W., von Delft, F., Edwards, A., Arrowsmith, C.H., Wikstroem, M., Bountra, C., Knapp, S.

(2010) PLoS Biol 8: 426

Released	2008-08-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	CALCIUM CALMODULIN DEPENDENT PROTEIN KINASE TYPE II ALPHA CHAIN (protein)
Unique Ligands	FEF, PGO

1 to 25 of 170 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1DIO | pdb_00001dio

1DS1 | pdb_00001ds1

1EEX | pdb_00001eex

1EGM | pdb_00001egm

1EGV | pdb_00001egv

1EVU | pdb_00001evu

1EX0 | pdb_00001ex0

1HHY | pdb_00001hhy

1HQS | pdb_00001hqs

1IWP | pdb_00001iwp

1K6E | pdb_00001k6e

1RRM | pdb_00001rrm

1UC4 | pdb_00001uc4

1WOM | pdb_00001wom

2E7Y | pdb_00002e7y

2EWG | pdb_00002ewg

2IZR | pdb_00002izr

2IZS | pdb_00002izs

2J1P | pdb_00002j1p

2ODV | pdb_00002odv

2OIF | pdb_00002oif

2RIL | pdb_00002ril

2V9L | pdb_00002v9l

2V9N | pdb_00002v9n

2VZ6 | pdb_00002vz6