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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Mainolfi, N."

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Search Summary

This query matches 86 Structures.

Refinements

Structure Determination Methodology

experimental (86)

Scientific Name of Source Organism

	Halobacterium salinarum NRC-1 (19)
	Equus caballus (13)
	Beggiatoa sp. PS (11)
	Thermus thermophilus HB8 (10)
	Homo sapiens (7)
	Dictyostelium discoideum (6)
	Cafeteriavirus-dependent mavirus (5)
	Cereibacter sphaeroides (5)
	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (5)
	Cereibacter sphaeroides 2.4.1 (2)

More...

Taxonomy

	Bacteria (35)
	Eukaryota (28)
	Archaea (19)
	Varidnaviria (5)

Experimental Method

	X-RAY DIFFRACTION (86)
	EPR (2)

Polymer Entity Type

Protein (86)

Refinement Resolution (Å)

	1.5 - 2.0 (49)
	2.0 - 2.5 (23)
	2.5 - 3.0 (12)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (7)
	2000 - 2004 (7)
	2005 - 2009 (8)
	2010 - 2014 (16)
	2015 - 2019 (48)

Enzyme Classification Name

	Oxidoreductases (13)
	Transferases (14)

Membrane Protein Annotation

	MemProtMD (19)
	PDBTM (19)
	mpstruc (18)

Symmetry Type

	Cyclic (54)
	Asymmetric (34)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (15)
	Membrane and cell surface proteins and peptides (19)
	All alpha proteins (13)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 25 of 86 Structures

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1E2D \| pdb_00001e2d	Download File View File

Human thymidylate kinase complexed with thymidine monophosphate, adenosine diphosphate and a magnesium-ion

Ostermann, N., Schlichting, I., Brundiers, R., Konrad, M., Reinstein, J., Veit, T., Goody, R.S., Lavie, A.

(2000) Structure 8: 629

Released	2001-05-17
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	THYMIDYLATE KINASE (protein)
Unique Ligands	ADP, MG, TMP

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1E2E \| pdb_00001e2e	Download File View File

Human thymidylate kinase complexed with thymidine monophosphate, adenosine diphosphate,a magnesium-ion and ALf3

Ostermann, N., Schlichting, I., Brundiers, R., Konrad, M., Reinstein, J., Veit, T., Goody, R.S., Lavie, A.

(2000) Structure 8: 629

Released	2001-05-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	THYMIDYLATE KINASE (protein)
Unique Ligands	ADP, AF3, MG, TMP

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1E2F \| pdb_00001e2f	Download File View File

Human thymidylate kinase complexed with thymidine monophosphate, adenosine diphosphate and a magnesium-ion

Ostermann, N., Schlichting, I., Brundiers, R., Konrad, M., Reinstein, J., Veit, T., Goody, R.S., Lavie, A.

(2000) Structure 8: 629

Released	2001-05-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	THYMIDYLATE KINASE (protein)
Unique Ligands	ADP, ANP, MG, TMP

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1E2G \| pdb_00001e2g	Download File View File

Human thymidylate kinase complexed with ADP, TDP and a magnesium-ion

Ostermann, N., Schlichting, I., Brundiers, R., Konrad, M., Reinstein, J., Veit, T., Goody, R.S., Lavie, A.

(2000) Structure 8: 629

Released	2001-05-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	THYMIDYLATE KINASE (protein)
Unique Ligands	ADP, MG, TMP, TYD

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1E2Q \| pdb_00001e2q	Download File View File

Human thymidylate kinase complexed with TP5A and a magnesium-ion

Ostermann, N., Schlichting, I., Brundiers, R., Konrad, M., Reinstein, J., Veit, T., Goody, R.S., Lavie, A.

(2000) Structure 8: 629

Released	2001-05-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	THYMIDYLATE KINASE (protein)
Unique Ligands	ATP, MG, TMP

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1E99 \| pdb_00001e99	Download File View File

Human thymidylate kinase complexed with AZTMP and ADP

Ostermann, N., Lavie, A., Padiyar, S., Brundiers, R., Veit, T., Reinstein, J., Goody, R.S., Konrad, M., Schlichting, I.

(2000) J Mol Biology 304: 43

Released	2001-10-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	THYMIDYLATE KINASE (protein)
Unique Ligands	ADP, ATM, MG

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1E9F \| pdb_00001e9f	Download File View File

Mutant human thymidylate kinase complexed with TMP and ADP

Ostermann, N., Lavie, A., Padiyar, S., Brundiers, R., Veit, T., Reinstein, J., Goody, R.S., Konrad, M., Schlichting, I.

(2000) J Mol Biology 304: 43

Released	2001-10-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	THYMIDYLATE KINASE (protein)
Unique Ligands	ADP, MG, TMP

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1QF9 \| pdb_00001qf9	Download File View File

PH INFLUENCES FLUORIDE COORDINATION NUMBER OF THE ALFX PHOSPHORYL TRANSFER TRANSITION STATE ANALOG IN UMP/CMP KINASE

Schlichting, I., Reinstein, J.

(1999) Nat Struct Biol 6: 721-723

Released	1999-08-16
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Dictyostelium discoideum
Macromolecule	PROTEIN (URIDYLMONOPHOSPHATE/CYTIDYLMONOPHOSPHATE KINASE) (protein)
Unique Ligands	ADP, ALF, C5P, MG

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1UKE \| pdb_00001uke	Download File View File

UMP/CMP KINASE FROM SLIME MOLD

Scheffzek, K., Kliche, W., Wiesmueller, L., Reinstein, J.

(1996) Biochemistry 35: 9716-9727

Released	1998-04-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Dictyostelium discoideum
Macromolecule	URIDYLMONOPHOSPHATE/CYTIDYLMONOPHOSPHATE KINASE (protein)
Unique Ligands	MG, UP5

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2AKP \| pdb_00002akp	Download File View File

Hsp90 Delta24-N210 mutant

Richter, K., Moser, S., Hagn, F., Friedrich, R., Hainzl, O., Heller, M., Schlee, S., Kessler, H., Reinstein, J., Buchner, J.

(2006) J Biological Chem 281: 11301-11311

Released	2006-01-31
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ATP-dependent molecular chaperone HSP82 (protein)

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2IYG \| pdb_00002iyg	Download File View File

Dark state structure of the BLUF domain of the rhodobacterial protein AppA

Jung, A., Reinstein, J., Domratcheva, T., Shoeman, R.-L., Schlichting, I.

(2006) J Mol Biology 362: 717

Released	2006-09-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Cereibacter sphaeroides
Macromolecule	APPA, ANTIREPRESSOR OF PPSR, SENSOR OF BLUE LIGHT (protein)
Unique Ligands	DTT, DTU, FMN

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2IYI \| pdb_00002iyi	Download File View File

structure of a light-induced intermediate of the BLUF domain of the rhodobacterial protein AppA

Jung, A., Reinstein, J., Domratcheva, T., Shoeman, R.-L., Schlichting, I.

(2006) J Mol Biology 362: 717-732

Released	2006-09-06
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Cereibacter sphaeroides
Macromolecule	APPA, ANTIREPRESSOR OF PPSR, SENSOR OF BLUE LIGHT (protein)
Unique Ligands	DTT, DTU, FMN

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2UKD \| pdb_00002ukd	Download File View File

UMP/CMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP

Schlichting, I., Reinstein, J.

(1997) Biochemistry 36: 9290-9296

Released	1998-05-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Dictyostelium discoideum
Macromolecule	URIDYLMONOPHOSPHATE/CYTIDYLMONOPHOSPHATE KINASE (protein)
Unique Ligands	ADP, C5P, MG

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3GFX \| pdb_00003gfx	Download File View File

Klebsiella pneumoniae BlrP1 pH 4.5 calcium/cy-diGMP complex

Barends, T., Hartmann, E., Griese, J., Beitlich, T., Kirienko, N., Ryjenkov, D., Reinstein, J., Shoeman, R., Gomelsky, M., Schlichting, I.

(2009) Nature 459: 1015-1018

Released	2009-06-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Macromolecule	Klebsiella pneumoniae BlrP1 (protein)
Unique Ligands	C2E, CA, FMN

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3GFY \| pdb_00003gfy	Download File View File

Klebsiella pneumoniae BlrP1 with FMN and cyclic diGMP, no metal ions

Barends, T., Hartmann, E., Griese, J., Beitlich, T., Kirienko, N., Ryjenkov, D., Reinstein, J., Shoeman, R., Gomelsky, M., Schlichting, I.

(2009) Nature 459: 1015-1018

Released	2009-06-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Macromolecule	Klebsiella pneumoniae BlrP1 (protein)
Unique Ligands	C2E, FMN

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3GFZ \| pdb_00003gfz	Download File View File

Klebsiella pneumoniae BlrP1 pH 6 manganese/cy-diGMP complex

Barends, T., Hartmann, E., Griese, J., Beitlich, T., Kirienko, N., Ryjenkov, D., Reinstein, J., Shoeman, R., Gomelsky, M., Schlichting, I.

(2009) Nature 459: 1015-1018

Released	2009-06-23
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Macromolecule	Klebsiella pneumoniae BlrP1 (protein)
Unique Ligands	C2E, FMN, MN

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3GG0 \| pdb_00003gg0	Download File View File

Klebsiella pneumoniae BlrP1 pH 9.0 manganese/cy-diGMP complex

Barends, T., Hartmann, E., Griese, J., Beitlich, T., Kirienko, N., Ryjenkov, D., Reinstein, J., Shoeman, R., Gomelsky, M., Schlichting, I.

(2009) Nature 459: 1015-1018

Released	2009-06-23
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Macromolecule	Klebsiella pneumoniae BlrP1 (protein)
Unique Ligands	C2E, FMN, MN

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3GG1 \| pdb_00003gg1	Download File View File

Klebsiella pneumoniae BlrP1 pH 8.0 calcium/cy-diGMP complex

Barends, T., Hartmann, E., Griese, J., Beitlich, T., Kirienko, N., Ryjenkov, D., Reinstein, J., Shoeman, R., Gomelsky, M., Schlichting, I.

(2009) Nature 459: 1015-1018

Released	2009-06-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Macromolecule	Klebsiella pneumoniae Blrp1 (protein)
Unique Ligands	C2E, CA, FMN

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3TMK \| pdb_00003tmk	Download File View File

CRYSTAL STRUCTURE OF YEAST THYMIDYLATE KINASE COMPLEXED WITH THE BISUBSTRATE INHIBITOR TP5A AT 2.0 A RESOLUTION: IMPLICATIONS FOR CATALYSIS AND AZT ACTIVATION

Lavie, A., Schlichting, I., Konrad, M., Goody, R.S., Brundiers, R., Reinstein, J.

(1998) Biochemistry 37: 3677-3686

Released	1999-02-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	THYMIDYLATE KINASE (protein)
Unique Ligands	T5A

Explore in 3D

3UKD \| pdb_00003ukd	Download File View File

UMP/CMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND ALF3

Schlichting, I., Reinstein, J.

(1997) Biochemistry 36: 9290-9296

Released	1998-05-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Dictyostelium discoideum
Macromolecule	URIDYLMONOPHOSPHATE/CYTIDYLMONOPHOSPHATE KINASE (protein)
Unique Ligands	ADP, AF3, C5P, MG

Explore in 3D

4HH0 \| pdb_00004hh0	Download File View File

Dark-state structure of AppA C20S without the Cys-rich region from Rb. sphaeroides

Winkler, A., Heintz, U., Lindner, R., Reinstein, J., Shoeman, R., Schlichting, I.

(2013) Nat Struct Mol Biol 20: 859-867

Released	2013-06-05
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Cereibacter sphaeroides
Macromolecule	AppA protein (protein)
Unique Ligands	CL, FMN

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4HH1 \| pdb_00004hh1	Download File View File

Dark-state structure of AppA wild-type without the Cys-rich region from Rb. sphaeroides

Winkler, A., Heintz, U., Lindner, R., Reinstein, J., Shoeman, R., Schlichting, I.

(2013) Nat Struct Mol Biol 20: 859-867

Released	2013-06-05
Method	X-RAY DIFFRACTION 3.501 Å
Organisms	Cereibacter sphaeroides
Macromolecule	AppA protein (protein)
Unique Ligands	FMN

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4HH2 \| pdb_00004hh2	Download File View File

Structure of PpsR without the HTH motif from Rb. sphaeroides

Winkler, A., Heintz, U., Lindner, R., Reinstein, J., Shoeman, R., Schlichting, I.

(2013) Nat Struct Mol Biol 20: 859-867

Released	2013-06-05
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Cereibacter sphaeroides 2.4.1
Macromolecule	Transcriptional regulator, PpsR (protein)

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4HH3 \| pdb_00004hh3	Download File View File

Structure of the AppA-PpsR2 core complex from Rb. sphaeroides

Winkler, A., Heintz, U., Lindner, R., Reinstein, J., Shoeman, R., Schlichting, I.

(2013) Nat Struct Mol Biol 20: 859-867

Released	2013-06-05
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Cereibacter sphaeroides Cereibacter sphaeroides 2.4.1
Macromolecule	AppA protein (protein) Transcriptional regulator, PpsR (protein)

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4HSE \| pdb_00004hse	Download File View File

Crystal structure of ClpB NBD1 in complex with guanidinium chloride and ADP

Zeymer, C., Werbeck, N.D., Schlichting, I., Reinstein, J.

(2013) J Biological Chem 288: 7065-7076

Released	2013-01-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Chaperone protein ClpB (protein)
Unique Ligands	ADP, CL, GAI

1 to 25 of 86 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1E2D | pdb_00001e2d

1E2E | pdb_00001e2e

1E2F | pdb_00001e2f

1E2G | pdb_00001e2g

1E2Q | pdb_00001e2q

1E99 | pdb_00001e99

1E9F | pdb_00001e9f

1QF9 | pdb_00001qf9

1UKE | pdb_00001uke

2AKP | pdb_00002akp

2IYG | pdb_00002iyg

2IYI | pdb_00002iyi

2UKD | pdb_00002ukd

3GFX | pdb_00003gfx

3GFY | pdb_00003gfy

3GFZ | pdb_00003gfz

3GG0 | pdb_00003gg0

3GG1 | pdb_00003gg1

3TMK | pdb_00003tmk

3UKD | pdb_00003ukd

4HH0 | pdb_00004hh0

4HH1 | pdb_00004hh1

4HH2 | pdb_00004hh2

4HH3 | pdb_00004hh3

4HSE | pdb_00004hse