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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Cong, Y."

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Search Summary

This query matches 58 Structures.

Refinements

Structure Determination Methodology

experimental (58)

Scientific Name of Source Organism

	Gallus gallus (10)
	Homo sapiens (10)
	synthetic construct (5)
	Lama glama (4)
	Methanothermococcus thermolithotrophicus (4)
	Pyrococcus horikoshii (2)
	Tequintavirus T5 (2)
	Aequorea victoria (1)
	Bradyrhizobium sp. ORS 375 (1)
	Cyanobacterium aponinum (1)

More...

Taxonomy

	Eukaryota (28)
	Bacteria (10)
	Archaea (9)
	other sequences (5)
	Duplodnaviria (3)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (53)
	SOLUTION NMR (5)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (56)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (20)
	2.0 - 2.5 (14)
	2.5 - 3.0 (9)
	3.0 - 3.5 (2)
	> 4.5 (1)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (2)
	2005 - 2009 (3)
	2010 - 2014 (5)
	2015 - 2019 (23)
	2020 - 2024 (22)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (14)
	Transferases (6)
	Oxidoreductases (5)
	Ligases (2)
	Isomerases (1)

Symmetry Type

	Asymmetric (36)
	Dihedral (11)
	Cyclic (8)
	Octahedral (1)
	Tetrahedral (1)

SCOP Classification

	All alpha proteins (6)
	Alpha and beta proteins (a/b) (8)
	Artifacts (6)
	Alpha and beta proteins (a+b) (11)
	All beta proteins (8)
	Designed proteins (1)

AllSelected

1 to 25 of 58 Structures

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1M9S \| pdb_00001m9s	Download File View File

Crystal structure of Internalin B (InlB), a Listeria monocytogenes virulence protein containing SH3-like domains.

Marino, M., Banerjee, M., Jonquieres, R., Cossart, P., Ghosh, P.

(2002) EMBO J 21: 5623-5634

Released	2002-11-06
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Listeria monocytogenes
Macromolecule	Internalin B (protein)
Unique Ligands	SO4, TB

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1NCZ \| pdb_00001ncz	Download File View File

TROPONIN C

Sundaralingam, M., Rao, S.T.

(1996) Acta Crystallogr D Biol Crystallogr 52: 916-922

Released	1996-12-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Gallus gallus
Macromolecule	TROPONIN C (protein)
Unique Ligands	SO4, TB

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1TJB \| pdb_00001tjb	Download File View File

Crystal Structure of a High Affinity Lanthanide-Binding Peptide (LBT)

Nitz, M., Sherawat, M., Franz, K.J., Peisach, E., Allen, K.N., Imperiali, B.

(2004) Angew Chem Int Ed Engl 43: 3682-3685

Released	2004-08-03
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	Lanthanide-Binding Peptide (protein)
Unique Ligands	CL, TB

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2K61 \| pdb_00002k61	Download File View File

Solution structure of CaM complexed to DAPk peptide

Bertini, I., Luchinat, C., Parigi, G., Yuan, J.

(2009) J Am Chem Soc 131: 5134-5144

Released	2009-05-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Calmodulin (protein)
Unique Ligands	CA, TB

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2KTR \| pdb_00002ktr	Download File View File

NMR structure of p62 PB1 dimer determined based on PCS

Saio, T., Yokochi, M., Kumeta, H., Inagaki, F.

(2010) J Biomol NMR 46: 271-280

Released	2010-04-07
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	Sequestosome-1 (protein)
Unique Ligands	TB

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2OJR \| pdb_00002ojr	Download File View File

Structure of ubiquitin solved by SAD using the Lanthanide-Binding Tag

Silvaggi, N.R., Allen, K.N.

(2007) J Am Chem Soc 129: 7114-7120

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein)
Unique Ligands	TB

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2RSE \| pdb_00002rse	Download File View File

NMR structure of FKBP12-mTOR FRB domain-rapamycin complex structure determined based on PCS

Kobashigawa, Y., Ushio, M., Saio, T., Inagaki, F.

(2012) J Biomol NMR 53: 53-63

Released	2012-05-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1A (protein) Serine/threonine-protein kinase mTOR (protein)
Unique Ligands	TB

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2V15 \| pdb_00002v15	Download File View File

Terbium binding in Streptococcus suis Dpr protein

Havukainen, H., Papageorgiou, A.C., Kauko, A.

(2008) Protein Sci 17: 1513-1521

Released	2008-06-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptococcus suis
Macromolecule	DNA PROTECTION DURING STARVATION PROTEIN (protein)
Unique Ligands	CA, CL, EPE, TB

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359D \| pdb_0000359d	Download File View File

INHIBITION OF THE HAMMERHEAD RIBOZYME CLEAVAGE REACTION BY SITE-SPECIFIC BINDING OF TB(III)

Feig, A.L., Scott, W.G., Uhlenbeck, O.C.

(1998) Science 279: 81-84

Released	1997-11-07
Method	X-RAY DIFFRACTION 2.9 Å
Macromolecule	RNA HAMMERHEAD RIBOZYME (nucleic acid)
Unique Ligands	TB

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3LTQ \| pdb_00003ltq	Download File View File

Structure of Interleukin 1B solved by SAD using an inserted Lanthanide Binding Tag

Peisach, E., Allen, K.N.

(2011) J Am Chem Soc 133: 808-819

Released	2011-02-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-1 beta (protein)
Unique Ligands	ACT, SO4, TB

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4ESQ \| pdb_00004esq	Download File View File

Crystal structure of the extracellular domain of PknH from Mycobacterium tuberculosis

Cavazos, A., Prigozhin, D.M., Alber, T.

(2012) J Mol Biology 422: 488-494

Released	2012-07-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Serine/threonine protein kinase (protein)
Unique Ligands	BTB, TB

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4IRW \| pdb_00004irw	Download File View File

Co-crystallization of streptavidin-biotin complex with a lanthanide-ligand complex gives rise to a novel crystal form

Bandara, R.A.M.S.S., Liu, D.Q., Hindupur, A., Tesh, K.F., Fox, R.O.

To be published

Released	2014-01-29
Method	X-RAY DIFFRACTION 1.396 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)
Unique Ligands	BTN, NA, PDC, TB

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4U47 \| pdb_00004u47	Download File View File

Octameric RNA duplex soaked in terbium(III)chloride

Schaffer, M.F., Spingler, B., Schnabl, J., Peng, G., Olieric, V., Sigel, R.K.O.

(2016) Int J Mol Sci 17:

Released	2015-08-05
Method	X-RAY DIFFRACTION 1.952 Å
Organisms	synthetic construct
Macromolecule	RNA (5'-R(UPCPGPUPAPCPGPA)-3') (nucleic acid)
Unique Ligands	TB

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5GGM \| pdb_00005ggm	Download File View File

The NMR structure of calmodulin in CTAB reverse micelles

Xu, G., Cheng, K., Wu, Q., Liu, M., Li, C.

To be published

Released	2016-09-28
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Calmodulin (protein)
Unique Ligands	CA, TB

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5IZR \| pdb_00005izr	Download File View File

Human GIVD cytosolic phospholipase A2 in complex with Methyl gamma-Linolenyl Fluorophosphonate inhibitor and Terbium Chloride

Wang, H., Klein, M.G.

(2016) J Mol Biology 428: 2769-2779

Released	2016-06-08
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Homo sapiens
Macromolecule	Cytosolic phospholipase A2 delta (protein)
Unique Ligands	7FA, TB

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5MF2 \| pdb_00005mf2	Download File View File

Bacteriophage T5 distal tail protein pb9 co-crystallized with Tb-Xo4

Engilberge, S., Riobe, F., Di Pietro, S., Lassalle, L., Arnaud, C.-A., Breyton, C., Madern, D., Coquelle, N., Maury, O., Girard, E.

(2017) Chem Sci 8: 5909-5917

Released	2017-09-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tequintavirus T5
Macromolecule	Distal tail protein (protein)
Unique Ligands	7MT, CL, TB

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5OBB \| pdb_00005obb	Download File View File

Structure of a modified mouse H chain ferritin with a lanthanide binding motif in complex with Terbium

Baiocco, P., Trabuco, M.C.

(2018) PLoS One 13: e0201859-e0201859

Released	2018-07-25
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Mus musculus
Macromolecule	Ferritin heavy chain (protein)
Unique Ligands	TB

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5X7S \| pdb_00005x7s	Download File View File

Crystal structure of Paenibacillus sp. 598K alpha-1,6-glucosyltransferase, terbium derivative

Fujimoto, Z., Kishine, N., Suzuki, N., Momma, M., Ichinose, H., Kimura, A., Funane, K.

(2017) Biochem J 474: 2763-2778

Released	2017-07-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Paenibacillus sp. 598K
Macromolecule	Glycoside hydrolase family 31 alpha-glucosidase (protein)
Unique Ligands	CA, EDO, MES, MG, NI, SO4, TB

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5XBO \| pdb_00005xbo	Download File View File

Lanthanoid tagging via an unnatural amino acid for protein structure characterization

Jiang, W., Gu, X., Dong, X., Tang, C.

(2017) J Biomol NMR 67: 273-282

Released	2017-05-31
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Polyubiquitin-B (protein) UV excision repair protein RAD23 homolog A (protein)
Unique Ligands	TB