5ZCQ | pdb_00005zcq


PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE

PGV is a Ligand Of Interest in 5ZCQ designated by the RCSB
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Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5ZCQ_PGV_N_608Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5ZCQ_PGV_N_608Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5ZCQ_PGV_N_608 90% 32% 0.094 0.9781.15 1.53 5 810100%1
5ZCQ_PGV_P_304 87% 42% 0.099 0.9720.93 1.32 1 5100100%1
5ZCQ_PGV_A_609 87% 39% 0.105 0.9771.11 1.28 4 560100%1
5ZCQ_PGV_C_304 87% 45% 0.103 0.9740.82 1.31 - 620100%1
5ZCQ_PGV_P_302 20% 35% 0.19 0.7891.22 1.34 2 440100%1
5ZCQ_PGV_A_610 19% 8% 0.202 0.7951.86 2.74 4 1070100%1
5ZCQ_PGV_X_101 12% 27% 0.238 0.7641.35 1.59 3 8130100%1
5ZCQ_PGV_C_308 8% 25% 0.223 0.6941.4 1.62 3 770100%1
5B1B_PGV_C_302 94% 56% 0.078 0.9790.81 0.87 1 130100%1
7YPY_PGV_P_302 94% 54% 0.079 0.9780.79 0.99 2 210100%1
7VUW_PGV_A_608 90% 48% 0.096 0.9790.89 1.12 2 310100%1
6NKN_PGV_A_607 90% 43% 0.094 0.9760.85 1.34 2 500100%1
7VVR_PGV_A_609 89% 51% 0.1 0.9790.88 1.01 2 100100%1