3DTU | pdb_00003dtu


TRD: TRIDECANE

TRD is a Ligand Of Interest in 3DTU designated by the RCSB
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Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3DTU_TRD_D_7Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3DTU_TRD_D_7Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3DTU_TRD_D_7Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
3DTU_TRD_D_7 47% 81% 0.148 0.8850.24 0.58 - -20100%1
3DTU_TRD_A_1506 40% 84% 0.177 0.8870.24 0.52 - -30100%1
3DTU_TRD_D_288 27% 87% 0.19 0.890.24 0.44 - -0069%1
3DTU_TRD_C_577 24% 86% 0.18 0.8050.29 0.42 - -10100%1
3DTU_TRD_A_1504 23% 85% 0.235 0.8610.28 0.45 - -40100%1
3DTU_TRD_B_1023 22% 87% 0.181 0.8550.25 0.45 - -1069%1
3DTU_TRD_C_584 15% 87% 0.208 0.8550.1 0.58 - -12054%1
3DTU_TRD_C_578 14% 87% 0.219 0.8020.3 0.39 - -0085%1
3DTU_TRD_B_1031 13% 89% 0.231 0.8270.28 0.37 - -0069%1
3DTU_TRD_D_12 13% 87% 0.289 0.8570.27 0.41 - -0085%0.75
3DTU_TRD_B_1012 12% 87% 0.255 0.8420.26 0.43 - -0069%1
3DTU_TRD_A_1010 11% 84% 0.308 0.8570.25 0.51 - -0085%0.75
3DTU_TRD_A_1009 10% 89% 0.235 0.8270.23 0.41 - -0054%1
3DTU_TRD_C_583 10% 88% 0.26 0.8420.22 0.45 - -0054%1
3DTU_TRD_D_23 6% 88% 0.294 0.8160.22 0.44 - -0054%0.75
3DTU_TRD_A_1014 5% 88% 0.391 0.8940.22 0.43 - -0054%0.75
3DTU_TRD_C_579 4% 91% 0.307 0.7810.26 0.31 - -0054%1
3DTU_TRD_C_580 4% 87% 0.36 0.8020.25 0.45 - -0069%0.75
3DTU_TRD_A_1013 3% 90% 0.3 0.7120.28 0.31 - -0054%1
3DTU_TRD_C_582 2% 89% 0.346 0.7380.25 0.39 - -0054%0.75
3DTU_TRD_A_1505 2% 85% 0.392 0.7260.26 0.47 - -0085%0.75
3DTU_TRD_A_1015 2% 83% 0.394 0.7020.27 0.5 - -0085%0.75
3DTU_TRD_C_581 2% 83% 0.423 0.730.27 0.5 - -0085%0.75
6PW0_TRD_D_303 43% 75% 0.148 0.9270.12 0.85 - -0069%1
6PW1_TRD_D_301 42% 76% 0.141 0.9130.12 0.81 - -0069%1
2GSM_TRD_A_5007 41% 85% 0.15 0.8620.22 0.51 - -20100%1
3OMA_TRD_D_3 32% 82% 0.206 0.8820.2 0.59 - -10100%1
3OMI_TRD_D_303 30% 80% 0.192 0.8530.21 0.63 - -10100%1
6GA3_TRD_A_303 59% 75% 0.109 0.8910.12 0.84 - -00100%1
4ZR1_TRD_A_410 49% 75% 0.18 0.9260.12 0.84 - -30100%1
6LPK_TRD_A_2422 41% 98% 0.14 0.8530.14 0.14 - -00100%1