GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 2H16 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
2H16_GDP_A_301 | 96% | 49% | 0.076 | 0.987 | 1.11 | 0.87 | 1 | 2 | 0 | 0 | 100% | 1 |
2H16_GDP_B_302 | 96% | 46% | 0.074 | 0.984 | 0.95 | 1.12 | 1 | 5 | 1 | 0 | 100% | 1 |
2H16_GDP_C_303 | 96% | 45% | 0.077 | 0.987 | 0.9 | 1.23 | - | 4 | 0 | 0 | 100% | 1 |
2H16_GDP_D_304 | 93% | 50% | 0.084 | 0.979 | 0.77 | 1.16 | - | 2 | 0 | 0 | 100% | 1 |
2H17_GDP_A_201 | 97% | 45% | 0.067 | 0.982 | 1.15 | 0.98 | 2 | 1 | 0 | 0 | 100% | 1 |
1Z6Y_GDP_B_180 | 90% | 41% | 0.088 | 0.97 | 1.06 | 1.21 | 2 | 2 | 2 | 0 | 100% | 1 |
1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
4LUC_GDP_A_204 | 100% | 40% | 0.036 | 0.992 | 1.22 | 1.11 | 2 | 2 | 0 | 0 | 100% | 1 |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
8YL3_GDP_A_201 | 100% | 57% | 0.035 | 0.99 | 0.89 | 0.75 | 2 | - | 0 | 0 | 100% | 1 |