1P8J | pdb_00001p8j


NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 1P8J designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter1P8J_NAG_A_901Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter1P8J_NAG_A_901Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter1P8J_NAG_A_901Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
1P8J_NAG_A_901 16% 62% 0.135 0.7020.75 0.71 - 100100%1
1P8J_NAG_F_951 10% 62% 0.144 0.6450.67 0.77 - -10100%1
1P8J_NAG_B_901 6% 63% 0.157 0.590.67 0.73 - 110100%1
1P8J_NAG_F_901 4% 66% 0.176 0.565 0.61 0.7 - 100100%1
1P8J_NAG_H_901 3% 57% 0.171 0.478 0.68 0.96 - 100100%1
1P8J_NAG_E_901 3% 60% 0.161 0.466 0.69 0.82 - 100100%0.79
5JMO_NAG_B_601 31% 83% 0.173 0.840.29 0.48 - -00100%1
7QY0_NAG_A_616 30% 74% 0.182 0.8470.56 0.46 - -00100%0.63
8B4W_NAG_A_615 29% 83% 0.187 0.8430.44 0.34 - -00100%0.64
8B4V_NAG_A_612 23% 89% 0.193 0.8180.29 0.35 - -00100%0.65
7QY1_NAG_A_617 23% 83% 0.178 0.8010.42 0.37 - -00100%0.56
3H0C_NAG_A_794 100% 56% 0.021 0.9950.61 1.08 - 100100%1
5F9W_NAG_A_510 100% 88% 0.023 0.9940.24 0.43 - -00100%1
5LDS_NAG_B_1007 100% 67% 0.022 0.9950.48 0.79 - -00100%1
5O5D_NAG_A_601 100% 65% 0.022 0.9940.32 0.99 - 100100%1
6MUG_NAG_G_629 100% 76% 0.022 0.9940.35 0.58 - -00100%1