Structural Model for a 40-residue Beta-Amyloid Fibril with Three-Fold Symmetry, Positive Stagger
SOLID-STATE NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D fpRFDR | selective 13C and 15N beta-amyloid | 10 mM phosphate buffer | 10 | 7.4 | ambient | 300 | |
2 | 2D RAD | selective 13C and 15N beta-amyloid | 10 mM phosphate buffer | 10 | 7.4 | ambient | 300 | |
3 | 2D TEDOR | selective 13C and 15N beta-amyloid | 10 mM phosphate buffer | 10 | 7.4 | ambient | 300 | |
4 | fsREDOR | selective 13C and 15N beta-amyloid | 10 mM phosphate buffer | 10 | 7.4 | ambient | 300 | |
5 | 15N-BARE | selective 13C and 15N beta-amyloid | 10 mM phosphate buffer | 10 | 7.4 | ambient | 300 | |
6 | 13C-BARE | selective 13C and 15N beta-amyloid | 10 mM phosphate buffer | 10 | 7.4 | ambient | 300 | |
7 | PITHIRDS-CT | selective 13C and 15N beta-amyloid | 10 mM phosphate buffer | 10 | 7.4 | ambient | 300 | |
8 | 2D NCACX | selective 13C and 15N beta-amyloid | 10 mM phosphate buffer | 10 | 7.4 | ambient | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | Infinity | 400 |
2 | Varian | Infinity | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 40 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
2 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |