A K+ CATION-INDUCED CONFORMATIONAL SWITCH WITHIN A LOOP SPANNING SEGMENT OF A DNA QUADRUPLEX CONTAINING G-G-G-C REPEATS, NMR, 8 STRUCTURES
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | NOESY | 5 MM NACL, 0.2 MM NA2HPO4 | 6.5 | 1 atm | 293 | |||
2 | TOCSY | 5 MM NACL, 0.2 MM NA2HPO4 | 6.5 | 1 atm | 293 | |||
3 | COSY | 5 MM NACL, 0.2 MM NA2HPO4 | 6.5 | 1 atm | 293 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITY INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry | REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE | X-PLOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | ACCEPTABLE COVALENT ENERGY, LOW DISTANCE RESTRAINT VIOLATIONS, FAVORABLE NON-BONDED ENERGY |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 8 |
Additional NMR Experimental Information | |
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Details | STRUCTURE DETERMINED BY USING 5 NOESY MIXING TIME EXPERIMENTS IN D2O (50, 100, 150, 200 AND 300 MS) AND 2 NOESY MIXING TIME EXPERIMENTS IN H2O (80 AND 250 MS) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR | 3.1 | BRUNGER |
2 | structure solution | X-PLOR |