7TAW | pdb_00007taw

Cryo-EM structure of the Csy-AcrIF24-promoter DNA dimer

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyCRISPR-associated proteins 8052171 3001554 SCOP2B (2022-06-29)
O [auth c]SCOP2B SuperfamilyCRISPR-associated proteins 8052171 3001554 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AF_UNCLASSIFIEDe7tawA1 A: a+b complex topologyX: Cas8-likeH: Cas8f/Csy1 (From Topology)T: Cas8f/Csy1F: F_UNCLASSIFIEDECOD (1.6)
M [auth a]F_UNCLASSIFIEDe7tawa1 A: a+b complex topologyX: Cas8-likeH: Cas8f/Csy1 (From Topology)T: Cas8f/Csy1F: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe7tawB1 A: a+b two layersX: Alpha-beta plaitsH: CRISPR system Cas5 homologs (From Topology)T: CRISPR system Cas5 homologsF: F_UNCLASSIFIEDECOD (1.6)
N [auth b]F_UNCLASSIFIEDe7tawb1 A: a+b two layersX: Alpha-beta plaitsH: CRISPR system Cas5 homologs (From Topology)T: CRISPR system Cas5 homologsF: F_UNCLASSIFIEDECOD (1.6)
CCas_Csy4_Ce7tawC2 A: a+b two layersX: Alpha-beta plaitsH: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology)T: CRISPR transcript (pre-crRNA) processing endoribonuclease-relatedF: Cas_Csy4_CECOD (1.6)
CCas_Csy4_Ne7tawC1 A: a+b two layersX: Alpha-beta plaitsH: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology)T: CRISPR transcript (pre-crRNA) processing endoribonuclease-relatedF: Cas_Csy4_NECOD (1.6)
O [auth c]Cas_Csy4_Ce7tawc1 A: a+b two layersX: Alpha-beta plaitsH: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology)T: CRISPR transcript (pre-crRNA) processing endoribonuclease-relatedF: Cas_Csy4_CECOD (1.6)
O [auth c]Cas_Csy4_Ne7tawc2 A: a+b two layersX: Alpha-beta plaitsH: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology)T: CRISPR transcript (pre-crRNA) processing endoribonuclease-relatedF: Cas_Csy4_NECOD (1.6)
DF_UNCLASSIFIEDe7tawD1 A: a+b two layersX: Alpha-beta plaitsH: Cas7-relatedT: CRISPR-associated protein Cas7f/Csy3F: F_UNCLASSIFIEDECOD (1.6)
EF_UNCLASSIFIEDe7tawE1 A: a+b two layersX: Alpha-beta plaitsH: Cas7-relatedT: CRISPR-associated protein Cas7f/Csy3F: F_UNCLASSIFIEDECOD (1.6)
FF_UNCLASSIFIEDe7tawF1 A: a+b two layersX: Alpha-beta plaitsH: Cas7-relatedT: CRISPR-associated protein Cas7f/Csy3F: F_UNCLASSIFIEDECOD (1.6)
GF_UNCLASSIFIEDe7tawG1 A: a+b two layersX: Alpha-beta plaitsH: Cas7-relatedT: CRISPR-associated protein Cas7f/Csy3F: F_UNCLASSIFIEDECOD (1.6)
HF_UNCLASSIFIEDe7tawH1 A: a+b two layersX: Alpha-beta plaitsH: Cas7-relatedT: CRISPR-associated protein Cas7f/Csy3F: F_UNCLASSIFIEDECOD (1.6)
IF_UNCLASSIFIEDe7tawI1 A: a+b two layersX: Alpha-beta plaitsH: Cas7-relatedT: CRISPR-associated protein Cas7f/Csy3F: F_UNCLASSIFIEDECOD (1.6)
P [auth d]F_UNCLASSIFIEDe7tawd1 A: a+b two layersX: Alpha-beta plaitsH: Cas7-relatedT: CRISPR-associated protein Cas7f/Csy3F: F_UNCLASSIFIEDECOD (1.6)
Q [auth e]F_UNCLASSIFIEDe7tawe1 A: a+b two layersX: Alpha-beta plaitsH: Cas7-relatedT: CRISPR-associated protein Cas7f/Csy3F: F_UNCLASSIFIEDECOD (1.6)
R [auth f]F_UNCLASSIFIEDe7tawf1 A: a+b two layersX: Alpha-beta plaitsH: Cas7-relatedT: CRISPR-associated protein Cas7f/Csy3F: F_UNCLASSIFIEDECOD (1.6)
S [auth g]F_UNCLASSIFIEDe7tawg1 A: a+b two layersX: Alpha-beta plaitsH: Cas7-relatedT: CRISPR-associated protein Cas7f/Csy3F: F_UNCLASSIFIEDECOD (1.6)
T [auth h]F_UNCLASSIFIEDe7tawh1 A: a+b two layersX: Alpha-beta plaitsH: Cas7-relatedT: CRISPR-associated protein Cas7f/Csy3F: F_UNCLASSIFIEDECOD (1.6)
U [auth i]F_UNCLASSIFIEDe7tawi1 A: a+b two layersX: Alpha-beta plaitsH: Cas7-relatedT: CRISPR-associated protein Cas7f/Csy3F: F_UNCLASSIFIEDECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C3.30.70.2540 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CRISPR-associated endoribonuclease Cas6/Csy4CATH (utative)
O [auth c]3.30.70.2540 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CRISPR-associated endoribonuclease Cas6/Csy4CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
M [auth a]		PF09611CRISPR-associated protein (Cas_Csy1) (Cas_Csy1)CRISPR-associated protein (Cas_Csy1)- Family
B,
N [auth b]		PF09614CRISPR-associated protein (Cas_Csy2) (Cas_Csy2)CRISPR-associated protein (Cas_Csy2)- Family
C,
O [auth c]		PF09618CRISPR-associated protein (Cas_Csy4) (Cas_Csy4)CRISPR-associated protein (Cas_Csy4)- Family
D,
E,
F,
G,
H,
PF09615CRISPR-associated protein (Cas_Csy3) (Cas_Csy3)CRISPR-associated protein (Cas_Csy3)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
M [auth a]		CRISPR-associated protein Csy1- -
B,
N [auth b]		CRISPR type I-F/YPEST-associated protein Csy2- -
C,
O [auth c]		CRISPR-associated endonuclease Cas6/Csy4 -
D,
E,
F,
G,
H,
CRISPR type I-F/YPEST-associated protein Csy3- -
J, K
AcrIF24---
L [auth M],
V [auth m]		RNA (61-MER)---
W [auth Y]DNA (5'-D(P*AP*TP*AP*GP*CP*TP*CP*GP*AP*TP*TP*CP*GP*AP*GP*CP*TP*AP*A)-3')---
DNA (5'-D(P*TP*TP*AP*GP*CP*TP*CP*GP*AP*AP*TP*CP*GP*AP*GP*CP*TP*AP*T)-3')---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
M [auth a]		IPR013397Type I-F CRISPR-associated protein Csy1Family
B,
N [auth b]		IPR013398Type I-F CRISPR-associated protein Csy2Family
C,
O [auth c]		IPR013396CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPESTFamily
C,
O [auth c]		IPR042564CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST superfamilyHomologous Superfamily
D,
E,
F,
G,
H,
IPR013399Type I-F CRISPR-associated protein Csy3Family