6SB0
cryo-EM structure of mTORC1 bound to PRAS40-fused active RagA/C GTPases
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) | 8036936 | 3001600 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) | 8036936 | 3001600 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Roadblock/LC7 domain-like | 8093374 | 3001810 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8093372 | 3002022 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Roadblock/LC7 domain-like | 8093374 | 3001810 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Ras-like P-loop GTPases | 8093372 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | FRB_dom | e6sb0A4 | A: alpha bundles | X: Four-helical up-and-down bundle | H: FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) (From Topology) | T: FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) | F: FRB_dom | ECOD (1.6) |
A | IBN_N | e6sb0A3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: IBN_N | ECOD (1.6) |
A | FAT | e6sb0A1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: FAT | ECOD (1.6) |
A | PI3_PI4_kinase | e6sb0A2 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: PI3_PI4_kinase | ECOD (1.6) |
B | FRB_dom | e6sb0B4 | A: alpha bundles | X: Four-helical up-and-down bundle | H: FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) (From Topology) | T: FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) | F: FRB_dom | ECOD (1.6) |
B | IBN_N | e6sb0B3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: IBN_N | ECOD (1.6) |
B | FAT | e6sb0B1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: FAT | ECOD (1.6) |
B | PI3_PI4_kinase | e6sb0B2 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: PI3_PI4_kinase | ECOD (1.6) |
E [auth D] | Gtr1_RagA_C | e6sb0D2 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Gtr1_RagA_C | ECOD (1.6) |
E [auth D] | Gtr1_RagA_N | e6sb0D1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Gtr1_RagA_N | ECOD (1.6) |
J | Gtr1_RagA_C | e6sb0J1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Gtr1_RagA_C | ECOD (1.6) |
J | Gtr1_RagA_N | e6sb0J2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Gtr1_RagA_N | ECOD (1.6) |
F [auth Y] | KOG1517 | e6sb0Y2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: KOG1517 | ECOD (1.6) |
F [auth Y] | Raptor_N,HEAT_2 | e6sb0Y3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Raptor_N,HEAT_2 | ECOD (1.6) |
F [auth Y] | Raptor_N | e6sb0Y1 | A: a/b three-layered sandwiches | X: Caspase-like (From Topology) | H: Caspase-like (From Topology) | T: Caspase-like | F: Raptor_N | ECOD (1.6) |
K [auth N] | KOG1517 | e6sb0N1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: KOG1517 | ECOD (1.6) |
K [auth N] | Raptor_N,HEAT_2 | e6sb0N2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Raptor_N,HEAT_2 | ECOD (1.6) |
K [auth N] | Raptor_N | e6sb0N3 | A: a/b three-layered sandwiches | X: Caspase-like (From Topology) | H: Caspase-like (From Topology) | T: Caspase-like | F: Raptor_N | ECOD (1.6) |
C [auth E] | ANAPC4_WD40_9 | e6sb0E1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_9 | ECOD (1.6) |
H | ANAPC4_WD40_9 | e6sb0H1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_9 | ECOD (1.6) |
D [auth C] | Gtr1_RagA_C_1 | e6sb0C2 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Gtr1_RagA_C_1 | ECOD (1.6) |
D [auth C] | Gtr1_RagA_N | e6sb0C1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Gtr1_RagA_N | ECOD (1.6) |
I | Gtr1_RagA_C_1 | e6sb0I2 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Gtr1_RagA_C_1 | ECOD (1.6) |
I | Gtr1_RagA_N | e6sb0I1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Gtr1_RagA_N | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02260 | FATC domain (FATC) | FATC domain | - | Family | |
PF08771 | FKBP12-rapamycin binding domain (FRB_dom) | FKBP12-rapamycin binding domain | The macrolide antibiotic rapamycin and the cytosol protein FKBP12 can form a complex which specifically inhibits the TORC1 complex, leading to growth arrest. The FKBP12-rapamycin complex interferes with TORC1 function by binding to the FKBP12-rapa ... | Domain | |
PF00454 | Phosphatidylinositol 3- and 4-kinase (PI3_PI4_kinase) | Phosphatidylinositol 3- and 4-kinase | - | Family | |
PF11865 | Serine/threonine-protein kinase mTOR domain (mTOR_dom) | Serine/threonine-protein kinase mTOR domain | - | Repeat | |
PF02259 | FAT domain (FAT) | FAT domain | - | Repeat | |
E [auth D], J | PF04670 | Gtr1/RagA G protein conserved region (Gtr1_RagA) | Gtr1/RagA G protein conserved region | GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of ... | Domain |
F [auth Y], K [auth N] | PF14538 | Raptor N-terminal CASPase like domain (Raptor_N) | Raptor N-terminal CASPase like domain | This domain is found at the N-terminus of the Raptor protein. It has been identified to have a CASPase like structure [1]. It conserves the characteristic cys/his dyad of the caspases suggesting it may have a peptidase activity. | Domain |
F [auth Y], K [auth N] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
F [auth Y], K [auth N] | PF02985 | HEAT repeat (HEAT) | HEAT repeat | - | Repeat |
C [auth E], H | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
D [auth C], I | PF04670 | Gtr1/RagA G protein conserved region (Gtr1_RagA) | Gtr1/RagA G protein conserved region | GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of ... | Domain |
G [auth T], L [auth O] | PF15798 | Proline-rich AKT1 substrate 1 (PRAS) | Proline-rich AKT1 substrate 1 | - | Family |