6KM9
Crystal structure of SucA from Vibrio vulnificus
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | OxoGdeHyase_C | e6km9A1 | A: a/b three-layered sandwiches | X: TK C-terminal domain-like (From Topology) | H: TK C-terminal domain-like (From Topology) | T: TK C-terminal domain-like | F: OxoGdeHyase_C | ECOD (1.6) |
A | E1_dh | e6km9A3 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: E1_dh | ECOD (1.6) |
A | Transket_pyr | e6km9A2 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: Transket_pyr | ECOD (1.6) |
B | OxoGdeHyase_C | e6km9B1 | A: a/b three-layered sandwiches | X: TK C-terminal domain-like (From Topology) | H: TK C-terminal domain-like (From Topology) | T: TK C-terminal domain-like | F: OxoGdeHyase_C | ECOD (1.6) |
B | E1_dh | e6km9B2 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: E1_dh | ECOD (1.6) |
B | Transket_pyr | e6km9B3 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: Transket_pyr | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02779 | Transketolase, pyrimidine binding domain (Transket_pyr) | Transketolase, pyrimidine binding domain | This family includes transketolase enzymes, pyruvate dehydrogenases, and branched chain alpha-keto acid decarboxylases. | Domain | |
PF16870 | 2-oxoglutarate dehydrogenase C-terminal (OxoGdeHyase_C) | 2-oxoglutarate dehydrogenase C-terminal | - | Family | |
PF00676 | Dehydrogenase E1 component (E1_dh) | Dehydrogenase E1 component | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR042179 | Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily | Homologous Superfamily | |
IPR029061 | Thiamin diphosphate-binding fold | Homologous Superfamily | |
IPR032106 | 2-oxoglutarate dehydrogenase E1 component, N-terminal domain | Domain | |
IPR005475 | Transketolase-like, pyrimidine-binding domain | Domain | |
IPR011603 | 2-oxoglutarate dehydrogenase E1 component | Family | |
IPR031717 | 2-oxoglutarate dehydrogenase E1 component/KDG, C-terminal | Domain | |
IPR001017 | Dehydrogenase, E1 component | Domain |