6AU1 | pdb_00006au1

Structure of the PgaB (BpsB) glycoside hydrolase domain from Bordetella bronchiseptica

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	GHL13	e6au1A1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: GHL13	ECOD (1.6)
B	GHL13	e6au1B1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: GHL13	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
B	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF14883	Hypothetical glycosyl hydrolase family 13 (GHL13)	Hypothetical glycosyl hydrolase family 13	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Putative hemin storage protein	hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	carbohydrate metabolic process primary metabolic process metabolic process cellular process cell adhesion involved in biofilm formation cell adhesion cell aggregation biofilm formation cell-substrate adhesion aggregation of unicellular organisms submerged biofilm formation	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR011330	Glycoside hydrolase/deacetylase, beta/alpha-barrel	Homologous Superfamily
A, B	IPR023854	Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	Family
A, B	IPR051398	Polysaccharide Deacetylase	Family
A, B	IPR032772	Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal	Domain
A, B	IPR002509	NodB homology domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.