Novel x-ray structure of the YkuJ protein from Bacillus subtilis. Northeast Structural Genomics target SR360.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d2ffga1 | Alpha and beta proteins (a+b) | YkuJ-like | YkuJ-like | YkuJ-like | Hypothetical protein YkuJ | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
| A | d2ffga2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
| B | d2ffgb2 | Alpha and beta proteins (a+b) | YkuJ-like | YkuJ-like | YkuJ-like | Hypothetical protein YkuJ | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
| B | d2ffgb3 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | DUF1797 | e2ffgA1 | A: a+b two layers | X: YkuJ-like (From Topology) | H: YkuJ-like (From Topology) | T: YkuJ-like | F: DUF1797 | ECOD (1.6) |
| B | DUF1797 | e2ffgB1 | A: a+b two layers | X: YkuJ-like (From Topology) | H: YkuJ-like (From Topology) | T: YkuJ-like | F: DUF1797 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 3.30.720.20 | Alpha Beta | 2-Layer Sandwich | Signal recognition particle alu RNA binding heterodimer, srp9/1 | Protein of unknown function DUF1797 | CATH (4.3.0) |
| B | 3.30.720.20 | Alpha Beta | 2-Layer Sandwich | Signal recognition particle alu RNA binding heterodimer, srp9/1 | Protein of unknown function DUF1797 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF08796 | Protein of unknown function (DUF1797) (DUF1797) | Protein of unknown function (DUF1797) | - | Family |
