Download MendeleyCrystal structure of Phenazine 1-carboxylic acid decarboxylase from Mycobacterium fortuitum
Gahloth, D., Leys, D.To be published.
7PDA | pdb_00007pda
Crystal structure of Phenazine 1-carboxylic acid decarboxylase from Mycobacterium fortuitum
- PDB DOI: https://doi.org/10.2210/pdb7PDA/pdb
- Classification: LYASE
- Organism(s): Mycolicibacterium fortuitum, unidentified
- Expression System: Escherichia, unidentified
- Mutation(s): No
- Deposited: 2021-08-05 Released: 2022-08-24
- Funding Organization(s): European Research Council (ERC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.65 Å
- R-Value Free: 0.258 (Depositor), 0.260 (DCC)
- R-Value Work: 0.184 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.188 (Depositor)
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| UbiD family decarboxylase | 479 | Mycolicibacterium fortuitum | Mutation(s): 0 Gene Names: XA26_16650 |  | |
UniProt | |||||
Find proteins for A0A0N9Y7U2 (Mycolicibacterium fortuitum) Explore A0A0N9Y7U2 Go to UniProtKB: A0A0N9Y7U2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0N9Y7U2 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| UNK | 5 | unidentified | Mutation(s): 0 |  | |
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 4LU (Subject of Investigation/LOI) Query on 4LU | D [auth A] | 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y
l)-D-ribitol C22 H30 N4 O9 P KOUJZPGFPGLHCZ-IYOUNJFTSA-O |  | ||
| MN Query on MN | C [auth A] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | ||
| NA Query on NA | E [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.65 Å
- R-Value Free: 0.258 (Depositor), 0.260 (DCC)
- R-Value Work: 0.184 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.188 (Depositor)
Space Group: P 3 1 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 124.696 | α = 90 |
| b = 124.696 | β = 90 |
| c = 68.846 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| xia2 | data reduction |
| XDS | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-08-24 Deposition Author(s): Gahloth, D., Leys, D.
| Funding Organization | Location | Grant Number |
|---|---|---|
| European Research Council (ERC) | European Union | -- |
Revision History (Full details and data files)
- Version 1.0: 2022-08-24
Type: Initial release - Version 1.1: 2024-01-31
Changes: Data collection, Refinement description
