Download MendeleyCrystal structure of a synthase 2 from santalum album
Han, X., Ko, T.P., Liu, W.D., Zheng, Y.Y., Chen, C.C., Guo, R.T.To be published.
6A2D | pdb_00006a2d
Crystal structure of a synthase 2 from santalum album in complex with ligand1
- PDB DOI: https://doi.org/10.2210/pdb6A2D/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Santalum album
- Expression System: Escherichia
- Mutation(s): No
- Deposited: 2018-06-10 Released: 2019-06-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.96 Å
- R-Value Free: 0.223 (Depositor), 0.230 (DCC)
- R-Value Work: 0.180 (Depositor), 0.190 (DCC)
- R-Value Observed: 0.182 (Depositor)
Starting Model: experimental
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This is version 2.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Sesquisabinene B synthase 2 | 566 | Santalum album | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for A0A0A0RCB5 (Santalum album) Explore A0A0A0RCB5 Go to UniProtKB: A0A0A0RCB5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0A0RCB5 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 6R2 (Subject of Investigation/LOI) Query on 6R2 | C [auth A], F [auth B] | [bis(chloranyl)-[oxidanyl-[(2~{E},6~{E})-3,7,11-trimethyldodeca-2,6,10-trienoxy]phosphoryl]methyl]phosphonic acid C16 H28 Cl2 O6 P2 SCZVAQFGXARGRA-YFVJMOTDSA-N |  | ||
| MG Query on MG | D [auth A], E [auth A], G [auth B], H [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.96 Å
- R-Value Free: 0.223 (Depositor), 0.230 (DCC)
- R-Value Work: 0.180 (Depositor), 0.190 (DCC)
- R-Value Observed: 0.182 (Depositor)
Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 132.527 | α = 90 |
| b = 132.527 | β = 90 |
| c = 141.903 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2019-06-12 Deposition Author(s): Han, X., Ko, T.P., Liu, W.D., Zheng, Y.Y., Chen, C.C., Guo, R.T.
Revision History (Full details and data files)
- Version 1.0: 2019-06-12
Type: Initial release - Version 2.0: 2020-09-02
Type: Coordinate replacement
Reason: Model completeness
Changes: Advisory, Atomic model, Author supporting evidence, Data collection, Derived calculations, Other, Refinement description, Structure summary - Version 2.1: 2023-11-22
Changes: Data collection, Database references, Refinement description
