Download MendeleyStructure of Class A Beta-lactamase from Bordetella bronchiseptica RB50 in a complex with Avibactam
Maltseva, N., Kim, Y., Endres, M., Joachimiak, A.To be published.
9BZQ | pdb_00009bzq
Structure of Class A Beta-lactamase from Bordetella bronchiseptica RB50 in a complex with Avibactam
- PDB DOI: https://doi.org/10.2210/pdb9BZQ/pdb
- Classification: HYDROLASE
- Organism(s): Bordetella bronchiseptica RB50
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2024-05-24 Released: 2024-06-12
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.47 Å
- R-Value Free: 0.155 (Depositor), 0.160 (DCC)
- R-Value Work: 0.124 (Depositor), 0.120 (DCC)
- R-Value Observed: 0.126 (Depositor)
Starting Model: experimental
View more details
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| class A Beta-lactamase, PenP superfamily | 272 | Bordetella bronchiseptica RB50 | Mutation(s): 0 Gene Names: BB2049 EC: 3.5.2.6 |  | |
UniProt | |||||
Find proteins for A0A0H3LUA9 (Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)) Explore A0A0H3LUA9 Go to UniProtKB: A0A0H3LUA9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H3LUA9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NXL (Subject of Investigation/LOI) Query on NXL | B [auth A] | (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide C7 H13 N3 O6 S WJDGWXPPFHLLNL-RITPCOANSA-N |  | ||
| SIN Query on SIN | C [auth A] | SUCCINIC ACID C4 H6 O4 KDYFGRWQOYBRFD-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | E [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| FMT Query on FMT | D [auth A] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.47 Å
- R-Value Free: 0.155 (Depositor), 0.160 (DCC)
- R-Value Work: 0.124 (Depositor), 0.120 (DCC)
- R-Value Observed: 0.126 (Depositor)
Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 36.223 | α = 90 |
| b = 79.463 | β = 108.17 |
| c = 42.939 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-06-12 Deposition Author(s): Maltseva, N., Kim, Y., Endres, M., Joachimiak, A., Center for Structural Biology of Infectious Diseases (CSBID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2024-06-12
Type: Initial release - Version 1.1: 2024-11-06
Changes: Structure summary
