Download MendeleyBacterial genome encoded ParMs
Ali, S., Robinson, R.C., Narita, A.To be published.
8X1I
ParM present of genome of Desufitobacterium hafniense - Dh-cParM1
- PDB DOI: https://doi.org/10.2210/pdb8X1I/pdb
- EM Map EMD-37996: EMDB EMDataResource
- Classification: STRUCTURAL PROTEIN
- Organism(s): Desulfitobacterium hafniense Y51
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2023-11-07 Released: 2024-11-13
- Funding Organization(s): Japan Science and Technology, Japan Society for the Promotion of Science (JSPS)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 4.00 Å
- Aggregation State: FILAMENT
- Reconstruction Method: HELICAL
Starting Model: in silico
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wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ParM present of genome of Desufitobacterium hafniense - Dh-cParM1 | A [auth B] | 369 | Desulfitobacterium hafniense Y51 | Mutation(s): 0 Gene Names: DSY2109 |  |
UniProt | |||||
Find proteins for Q24VP4 (Desulfitobacterium hafniense (strain Y51)) Explore Q24VP4 Go to UniProtKB: Q24VP4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q24VP4 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ADP Query on ADP | B | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N |  | ||
| MG (Subject of Investigation/LOI) Query on MG | C [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 4.00 Å
- Aggregation State: FILAMENT
- Reconstruction Method: HELICAL
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | ISOLDE | |
| RECONSTRUCTION | RELION | 3.1/4.0 |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-11-13 Deposition Author(s): Ali, S., Robinson, R.C., Narita, A.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Japan Science and Technology | Japan | JPMJCR19S5 |
| Japan Society for the Promotion of Science (JSPS) | Japan | 18H02410 |
| Japan Society for the Promotion of Science (JSPS) | Japan | 21H02440 |
Revision History (Full details and data files)
- Version 1.0: 2024-11-13
Type: Initial release
