8VXT

Cryo-EM structure of mammalian Thorase filament, 3-layer refinement


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.25 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Cryo-EM Structure of AAA + ATPase Thorase Reveals Novel Helical Filament Formation.

Dar, M.A.Louder, R.Cortes, M.Chen, R.Ma, Q.Chakrabarti, M.Umanah, G.K.E.Dawson, T.M.Dawson, V.L.

(2024) bioRxiv 

  • DOI: https://doi.org/10.1101/2024.11.22.624887
  • Primary Citation of Related Structures:  
    8VXT

  • PubMed Abstract: 

    The AAA+ (ATPases associated with a variety of cellular activities) ATPase, Thorase, also known as ATAD1, plays multiple roles in synaptic plasticity, mitochondrial quality control and mTOR signaling through disassembling protein complexes like AMPAR and mTORC1 in an ATP-dependent manner. The Oligomerization of Thorase is crucial for its disassembly and remodeling functions. We show that wild-type Thorase forms long helical filaments in vitro , dependent on ATP binding but not hydrolysis. We report the Cryogenic Electron Microscopy (cryo-EM) structure of the Thorase filament at a resolution of 4 Å, revealing the dimeric arrangement of the basic repeating unit that is formed through a distinct interface compared to the hexameric MSP1/ATAD1E193Q assembly. Structure-guided mutagenesis confirms the role of critical amino acid residues required for filament formation, oligomerization and disassembly of mTORC1 protein complex. Together, our data reveals a novel filament structure of Thorase and provides critical information that elucidates the mechanism underlying Thorase filament formation and Thorase-mediated disassembly of the mTORC1 complex.


  • Organizational Affiliation

    Neuroregeneration and Stem Cell Programs, Institute for Cell Engineering, The Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Outer mitochondrial transmembrane helix translocase
A, B, C, D, E
A, B, C, D, E, F
321Mus musculusMutation(s): 0 
Gene Names: Atad1
EC: 7.4.2
UniProt
Find proteins for Q9D5T0 (Mus musculus)
Explore Q9D5T0 
Go to UniProtKB:  Q9D5T0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9D5T0
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.25 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:
RECONSTRUCTIONRELION

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute on Drug Abuse (NIH/NIDA)United StatesDA000266
National Institutes of Health/National Institute on Drug Abuse (NIH/NIDA)United StatesDA044123
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)United StatesNS099362

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-11
    Type: Initial release