PanDDA analysis group deposition
Tham, C.T., Coker, J.A., Krojer, T., Foster, W.R., Koekemoer, L., Douangamath, A., Talon, R., Fearon, D., von Delft, F., Yue, W.W., Bountra, C., Bezerra, G.A.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Asp/Glu-specific dipeptidyl-peptidase | 707 | Porphyromonas gingivalis | Mutation(s): 0 Gene Names: dpp11, PGN_0607 EC: 3.4.14 | ![]() | |
UniProt | |||||
Find proteins for B2RID1 (Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561)) Explore B2RID1 Go to UniProtKB: B2RID1 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B2RID1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
LDV (Subject of Investigation/LOI) Query on LDV | C [auth A], F [auth B] | 3-[(4-methylpiperidin-1-yl)methyl]-1H-indole C15 H20 N2 DGCGMYNLCDVYMB-UHFFFAOYSA-N | |||
CL Query on CL | D [auth A], E [auth A], G [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 101.852 | α = 90 |
b = 116.964 | β = 90 |
c = 148.464 | γ = 90 |
Software Name | Purpose |
---|---|
BUSTER | refinement |
Aimless | data scaling |
PDB_EXTRACT | data extraction |
XDS | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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University of Oxford | United Kingdom | 0006369 |