Download MendeleyCrystal Structure of 5-carboxymethyl-2-hydroxymuconate delta-isomerase
Eswaramoorthy, S., Almo, S.C., Swaminathan, S.To be published.
4JJ9 | pdb_00004jj9
Crystal Structure of 5-carboxymethyl-2-hydroxymuconate delta-isomerase
- PDB DOI: https://doi.org/10.2210/pdb4JJ9/pdb
- Classification: ISOMERASE
- Organism(s): Bordetella bronchiseptica RB50
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2013-03-07 Released: 2013-05-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.76 Å
- R-Value Free: 0.234 (Depositor), 0.234 (DCC)
- R-Value Work: 0.212 (Depositor), 0.213 (DCC)
- R-Value Observed: 0.213 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 5-carboxymethyl-2-hydroxymuconate delta-isomerase | 167 | Bordetella bronchiseptica RB50 | Mutation(s): 0 Gene Names: BB0738, hpaF EC: 5.3.3.10 |  | |
UniProt | |||||
Find proteins for A0A0H3LHY8 (Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)) Explore A0A0H3LHY8 Go to UniProtKB: A0A0H3LHY8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H3LHY8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | D [auth A], E [auth B], F [auth B], G [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.76 Å
- R-Value Free: 0.234 (Depositor), 0.234 (DCC)
- R-Value Work: 0.212 (Depositor), 0.213 (DCC)
- R-Value Observed: 0.213 (Depositor)
Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 60.345 | α = 90 |
| b = 75.481 | β = 90 |
| c = 107.645 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| SHELXS | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2013-05-01 Deposition Author(s): Eswaramoorthy, S., Chamala, S., Evans, B., Foti, F., Gizzi, A., Hillerich, B., Kar, A., Lafleur, J., Seidel, R., Villigas, G., Zencheck, W., Al Obaidi, N., Almo, S.C., Swaminathan, S., New York Structural Genomics Research Consortium (NYSGRC)
Revision History (Full details and data files)
- Version 1.0: 2013-05-01
Type: Initial release - Version 1.1: 2024-11-27
Changes: Data collection, Database references, Derived calculations, Structure summary
